Project name: M_2

Status: done

Started: 2025-02-27 09:30:53
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Chain sequence(s) A: MGSHHHHHHMQKKNQIAAAIVLRGLAKDGKFANTEAAAKMKKSDKIAAAIVLRGLAKDGKFAAAEAAAKMKKDDQIAAAIALRGMAKDGKFAVKEAAAKQNKNDQIAAAIVLRGLAKGGKFANAEAAAKKKKNDQIAAALVLRGVAKSGKFAGAEAAAKITRNDEIAAAIVLRGMAKGGRFFASGGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:47)
Show buried residues

Minimal score value
-3.1743
Maximal score value
2.1525
Average score
-0.9696
Total score value
-181.3235

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6567
2 G A -0.9332
3 S A -0.9835
4 H A -1.7945
5 H A -2.2248
6 H A -2.1791
7 H A -2.5754
8 H A -2.6224
9 H A -2.9678
10 M A -2.2917
11 Q A -2.6598
12 K A -2.9587
13 K A -2.4785
14 N A -2.3069
15 Q A -1.9636
16 I A 0.0000
17 A A -0.1788
18 A A -0.1100
19 A A 0.0000
20 I A 0.7549
21 V A 1.5318
22 L A 1.7856
23 R A 0.0000
24 G A 0.0000
25 L A 1.2507
26 A A -0.0071
27 K A -1.5802
28 D A -1.8422
29 G A -2.0455
30 K A -2.1541
31 F A 0.0000
32 A A -1.3283
33 N A -1.4062
34 T A -1.7735
35 E A -2.6872
36 A A -1.9474
37 A A 0.0000
38 A A -2.1774
39 K A -2.7667
40 M A 0.0000
41 K A -3.1513
42 K A -2.7811
43 S A -1.5482
44 D A -1.7349
45 K A -1.0357
46 I A 0.6109
47 A A 0.4619
48 A A 0.0000
49 A A 1.1325
50 I A 2.0397
51 V A 1.1130
52 L A 0.0000
53 R A -1.1377
54 G A -0.8365
55 L A -1.0078
56 A A -2.0568
57 K A -3.1743
58 D A -3.0991
59 G A -2.3197
60 K A -2.2742
61 F A -0.9978
62 A A -1.1314
63 A A 0.0000
64 A A -1.0701
65 E A -2.2093
66 A A -2.1736
67 A A -1.6559
68 A A -2.1410
69 K A -2.7612
70 M A 0.0000
71 K A -3.0181
72 K A -2.9045
73 D A 0.0000
74 D A 0.0000
75 Q A -1.1754
76 I A 0.2271
77 A A 0.0000
78 A A 0.0000
79 A A 0.2411
80 I A 0.0000
81 A A 0.0000
82 L A 0.2278
83 R A -1.6592
84 G A 0.0000
85 M A -0.3248
86 A A -0.7866
87 K A -1.8534
88 D A -0.8937
89 G A 0.0000
90 K A -1.4614
91 F A -1.0143
92 A A 0.0000
93 V A 0.0000
94 K A -2.3026
95 E A -1.6257
96 A A 0.0000
97 A A -2.1696
98 A A -1.7249
99 K A -1.7356
100 Q A -1.6239
101 N A -2.3531
102 K A -2.6886
103 N A -2.7741
104 D A -2.4400
105 Q A -1.6720
106 I A 0.1845
107 A A 0.2607
108 A A 0.0000
109 A A 0.0000
110 I A 2.1525
111 V A 1.9275
112 L A 0.0000
113 R A 0.0000
114 G A -0.1169
115 L A 0.0000
116 A A 0.0000
117 K A -1.2793
118 G A -1.1668
119 G A -1.3855
120 K A -1.5243
121 F A -0.3989
122 A A -0.8132
123 N A -1.7109
124 A A -1.3167
125 E A -2.3872
126 A A -1.5832
127 A A -1.6524
128 A A -1.8621
129 K A -2.3300
130 K A -2.1131
131 K A -3.1089
132 K A -2.9774
133 N A -2.2890
134 D A -2.0414
135 Q A 0.0000
136 I A 0.0000
137 A A 0.0000
138 A A 0.0000
139 A A 0.0000
140 L A 0.0000
141 V A 0.0000
142 L A 0.0000
143 R A -0.4763
144 G A -0.7271
145 V A -0.0671
146 A A -0.6020
147 K A -2.0392
148 S A -1.5423
149 G A -1.2489
150 K A -2.0777
151 F A -1.3513
152 A A 0.0000
153 G A 0.0000
154 A A 0.0000
155 E A -1.4565
156 A A -0.7637
157 A A 0.0000
158 A A -1.5605
159 K A -1.8662
160 I A -0.1090
161 T A 0.0000
162 R A -2.0746
163 N A -1.5382
164 D A -0.3153
165 E A 0.0000
166 I A 0.5411
167 A A 0.5591
168 A A 0.0000
169 A A 0.0000
170 I A 1.6112
171 V A 0.0000
172 L A 0.0000
173 R A -1.0737
174 G A -1.2794
175 M A -0.9636
176 A A -1.3673
177 K A -2.4902
178 G A -1.8108
179 G A -2.1306
180 R A -2.2141
181 F A -0.8674
182 F A 0.2630
183 A A -0.1874
184 S A -0.5613
185 G A -0.7748
186 G A -0.9998
187 G A -0.8197
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Laboratory of Theory of Biopolymers 2018