Project name: query_structure

Status: done

Started: 2026-03-16 19:56:22
Settings
Chain sequence(s) Y: MPRWYFDLSKGKCVRFIYGGCGGNRNNFESEDYCMAVC
input PDB
Selected Chain(s) Y
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with Y chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.0324
Maximal score value
2.3854
Average score
-0.4202
Total score value
-15.9667

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
18 M Y 0.7340
19 P Y 0.0203
20 R Y -0.6783
21 W Y -0.3620
22 Y Y -0.5959
23 F Y -0.5568
24 D Y -0.8132
25 L Y 0.2149
26 S Y -0.6575
27 K Y -1.9770
28 G Y -1.4569
29 K Y -1.7451
30 C Y 0.0000
31 V Y -0.7676
32 R Y -0.8416
33 F Y 0.5789
34 I Y 2.0097
35 Y Y 1.7833
36 G Y 0.4897
37 G Y 0.0308
38 C Y -0.1901
39 G Y -1.4581
40 G Y -1.2468
41 N Y -2.5237
42 R Y -3.0324
43 N Y -2.3512
44 N Y -2.0524
45 F Y -1.2658
46 E Y -1.1324
47 S Y -0.7500
48 E Y -1.0474
49 D Y -1.0085
50 Y Y 1.0026
51 C Y 0.0000
52 M Y 0.5860
53 A Y 1.2506
54 V Y 2.3854
55 C Y 1.4578
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Laboratory of Theory of Biopolymers 2018