Project name: 3B1

Status: done

Started: 2024-12-28 01:24:08
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Chain sequence(s) A: ARLEQTPTTTTKEAGESTINCVLRDSSCGLASTYWYFTKKGATKKESSNGGRYAETNKASKSFSLRISDLVEDSGTYHCKALAFGCQFQGYYEGGGTPLTVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:50)
Show buried residues

Minimal score value
-3.8224
Maximal score value
1.2783
Average score
-1.0049
Total score value
-102.5045

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.9457
2 R A -3.2266
3 L A 0.0000
4 E A -2.8573
5 Q A 0.0000
6 T A -0.6182
7 P A -0.4578
8 T A -0.4566
9 T A -0.1993
10 T A -0.2535
11 T A -0.8058
12 K A -1.6918
13 E A -2.2454
14 A A -1.6777
15 G A -1.9999
16 E A -2.9786
17 S A 0.0000
18 T A -1.2525
19 I A 0.0000
20 N A -1.2171
21 C A 0.0000
22 V A -1.3764
23 L A 0.0000
24 R A -3.0278
25 D A -2.9755
26 S A -1.7235
27 S A -0.5984
28 C A 0.0000
29 G A 0.1301
30 L A 0.5100
31 A A 0.5420
32 S A 0.4820
33 T A 0.0270
34 Y A -0.2608
35 W A 0.0000
36 Y A 0.0000
37 F A 0.0000
38 T A -2.9897
39 K A -3.8224
40 K A -2.9776
41 G A -1.9522
42 A A -2.3342
43 T A -2.1694
44 K A -3.3924
45 K A -3.7808
46 E A -3.5742
47 S A -1.9222
48 S A 0.0000
49 N A -2.1049
50 G A -1.6374
51 G A -1.1695
52 R A -2.0408
53 Y A -1.7977
54 A A -1.8051
55 E A -2.7506
56 T A -2.1467
57 N A -2.5817
58 K A -2.5686
59 A A -1.3154
60 S A -0.8697
61 K A -0.9981
62 S A 0.0000
63 F A 0.0000
64 S A 0.0000
65 L A 0.0000
66 R A -2.2779
67 I A 0.0000
68 S A -2.0547
69 D A -2.2718
70 L A 0.0000
71 V A -0.1251
72 E A -1.6122
73 D A 0.0000
74 S A -1.3056
75 G A 0.0000
76 T A -1.1526
77 Y A 0.0000
78 H A -0.9012
79 C A 0.0000
80 K A -0.6027
81 A A 0.0000
82 L A 0.9233
83 A A 0.0000
84 F A 1.2783
85 G A 0.0651
86 C A -0.1041
87 Q A -0.4857
88 F A 1.1010
89 Q A 0.1782
90 G A 0.8288
91 Y A 1.0187
92 Y A -0.9051
93 E A -2.1760
94 G A -2.0527
95 G A -1.5492
96 G A 0.0000
97 T A 0.0000
98 P A -0.6504
99 L A 0.0000
100 T A -0.7980
101 V A -0.8025
102 G A -1.2140
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Laboratory of Theory of Biopolymers 2018