Project name: 5EE

Status: done

Started: 2024-12-28 01:05:25
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Chain sequence(s) A: AARVEQTPTTTTKEAGESLTINCVLKGSNCALDSTYWYFTKKGATKKARLSTGGRYSDTKNTASKSFSLRISDLRVEDSGTYHCEAKSYTAGLGGSCSRTRYSEGGGTILTVKP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-2.9898
Maximal score value
0.9399
Average score
-0.9923
Total score value
-113.121

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.7329
2 A A -1.9539
3 R A -2.9898
4 V A 0.0000
5 E A -2.4480
6 Q A 0.0000
7 T A -0.5372
8 P A -0.2638
9 T A -0.1179
10 T A 0.4070
11 T A 0.1442
12 T A -0.6598
13 K A -1.9349
14 E A -2.9548
15 A A -2.4462
16 G A -2.1994
17 E A -2.4116
18 S A -1.8291
19 L A 0.0000
20 T A -1.1650
21 I A 0.0000
22 N A -1.0923
23 C A 0.0000
24 V A -1.3009
25 L A 0.0000
26 K A -2.4450
27 G A -1.7317
28 S A -1.5938
29 N A -1.5063
30 C A 0.0000
31 A A -0.4633
32 L A 0.0000
33 D A -1.0853
34 S A -0.4772
35 T A -0.5570
36 Y A -0.3521
37 W A 0.0000
38 Y A -0.8815
39 F A -1.0252
40 T A -1.7525
41 K A -2.4429
42 K A -2.3613
43 G A -1.7261
44 A A -1.7141
45 T A -1.6233
46 K A -2.3909
47 K A -2.3065
48 A A -1.8009
49 R A -1.8584
50 L A -0.7994
51 S A -0.7582
52 T A -1.1002
53 G A -0.9977
54 G A -0.9103
55 R A -1.3984
56 Y A -1.3862
57 S A -1.6799
58 D A -1.9983
59 T A -1.6727
60 K A -1.9044
61 N A -1.5895
62 T A -1.0345
63 A A -0.5522
64 S A -0.8035
65 K A -1.1656
66 S A -1.0976
67 F A 0.0000
68 S A -1.3870
69 L A 0.0000
70 R A -2.3599
71 I A 0.0000
72 S A -1.7592
73 D A -2.1126
74 L A 0.0000
75 R A -2.4199
76 V A -1.4967
77 E A -2.3911
78 D A 0.0000
79 S A 0.0000
80 G A 0.0000
81 T A -0.2345
82 Y A 0.0000
83 H A -0.5544
84 C A 0.0000
85 E A -0.6872
86 A A 0.0000
87 K A -0.7534
88 S A 0.0000
89 Y A -0.9308
90 T A -1.1472
91 A A -0.5864
92 G A -0.1904
93 L A 0.8809
94 G A -0.0381
95 G A -0.5004
96 S A -0.5428
97 C A -0.3452
98 S A -1.0287
99 R A -2.0718
100 T A -1.6113
101 R A -2.1178
102 Y A -0.5905
103 S A 0.0000
104 E A -1.6339
105 G A 0.0000
106 G A -1.1979
107 G A 0.0000
108 T A 0.0000
109 I A 0.9399
110 L A 0.0000
111 T A -0.8883
112 V A 0.0000
113 K A -2.3781
114 P A -1.5561
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Laboratory of Theory of Biopolymers 2018