Project name: 22-2.pdb

Status: done

Started: 2026-03-19 06:11:53
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGSISSHNDMSWYRQAPGNQLELVSFIASGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCNSRTYDGEKTYWGQGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Minimal score value
-3.0411
Maximal score value
1.2007
Average score
-0.6958
Total score value
-81.4103

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6386
2 V H -1.1920
3 Q H -1.0742
4 L H 0.0000
5 V H 1.2007
6 E H 0.0000
7 S H -0.2405
8 G H -0.7980
9 G H -0.2396
11 G H 0.3635
12 L H 1.1891
13 V H -0.0252
14 Q H -1.3692
15 P H -1.6268
16 G H -1.4454
17 G H -0.9718
18 S H -0.8320
19 L H -0.4259
20 R H -1.1603
21 L H 0.0000
22 S H -0.0954
23 C H 0.0000
24 A H 0.0176
25 A H -0.3341
26 S H -0.6038
27 G H -0.7786
28 S H -0.8345
29 I H 0.0000
30 S H -1.3461
35 S H -1.1564
36 H H -1.3333
37 N H -0.9916
38 D H -0.8089
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 Y H 0.5246
43 R H 0.0000
44 Q H -0.8911
45 A H -1.2665
46 P H -1.0274
47 G H -1.4501
48 N H -2.2107
49 Q H -1.8438
50 L H -0.4322
51 E H -0.6393
52 L H 0.5305
53 V H 0.0000
54 S H 0.0000
55 F H 0.6467
56 I H 0.0000
57 A H -0.6130
58 S H -1.2484
59 G H -0.9749
63 G H -0.5641
64 S H -0.1810
65 T H 0.4701
66 Y H 1.0855
67 Y H 0.0442
68 A H -0.8276
69 D H -2.2646
70 S H -1.7521
71 V H 0.0000
72 K H -2.3427
74 G H -1.6763
75 R H -1.4460
76 F H 0.0000
77 T H -0.4986
78 I H 0.0000
79 S H -0.4341
80 R H -1.1771
81 D H -1.8380
82 N H -2.3862
83 S H -1.8832
84 K H -2.4941
85 N H -1.9030
86 T H -1.0358
87 L H 0.0000
88 Y H -0.2944
89 L H 0.0000
90 Q H -0.7681
91 M H 0.0000
92 N H -1.1853
93 S H -1.2254
94 L H 0.0000
95 R H -2.2375
96 A H -1.6756
97 E H -2.2275
98 D H 0.0000
99 T H -0.6410
100 A H 0.0000
101 V H 0.2542
102 Y H 0.0000
103 Y H 0.5226
104 C H 0.0000
105 N H 0.0000
106 S H 0.0000
107 R H -1.6860
108 T H -1.5140
109 Y H -1.1687
110 D H -2.1745
113 G H -2.3451
114 E H -3.0411
115 K H -2.9512
116 T H -1.4506
117 Y H -0.8296
118 W H 0.1047
119 G H -0.0098
120 Q H -0.7704
121 G H -0.1352
122 T H -0.1030
123 T H 0.0119
124 V H 0.0000
125 T H 0.0140
126 V H 0.0000
127 S H -0.7606
128 S H -0.5715
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018