| Chain sequence(s) |
A: GGHKGHK
C: GGHKGHK B: GGHKGHK D: GGHKGHK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:30)
[INFO] Main: Simulation completed successfully. (00:01:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.2151 | |
| 2 | G | A | -2.8341 | |
| 3 | H | A | -3.9745 | |
| 4 | K | A | -4.8405 | |
| 5 | G | A | -3.7649 | |
| 6 | H | A | -3.6168 | |
| 7 | K | A | -3.3490 | |
| 1 | G | B | -2.8486 | |
| 2 | G | B | -3.1234 | |
| 3 | H | B | -3.8406 | |
| 4 | K | B | -5.0105 | |
| 5 | G | B | 0.0000 | |
| 6 | H | B | -3.5698 | |
| 7 | K | B | -3.5201 | |
| 1 | G | C | -2.5691 | |
| 2 | G | C | -2.8892 | |
| 3 | H | C | -2.9680 | |
| 4 | K | C | -3.6832 | |
| 5 | G | C | -2.7665 | |
| 6 | H | C | -2.9900 | |
| 7 | K | C | -2.4521 | |
| 1 | G | D | -1.7959 | |
| 2 | G | D | -2.8280 | |
| 3 | H | D | -3.3531 | |
| 4 | K | D | -3.9461 | |
| 5 | G | D | -2.8325 | |
| 6 | H | D | -2.4694 | |
| 7 | K | D | -2.4554 |