Project name: GGHKGHK4

Status: done

Started: 2026-02-23 04:07:43
Settings
Chain sequence(s) A: GGHKGHK
C: GGHKGHK
B: GGHKGHK
D: GGHKGHK
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:31)
Show buried residues

Minimal score value
-5.0105
Maximal score value
0.0
Average score
-3.0895
Total score value
-86.5064

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.2151
2 G A -2.8341
3 H A -3.9745
4 K A -4.8405
5 G A -3.7649
6 H A -3.6168
7 K A -3.3490
1 G B -2.8486
2 G B -3.1234
3 H B -3.8406
4 K B -5.0105
5 G B 0.0000
6 H B -3.5698
7 K B -3.5201
1 G C -2.5691
2 G C -2.8892
3 H C -2.9680
4 K C -3.6832
5 G C -2.7665
6 H C -2.9900
7 K C -2.4521
1 G D -1.7959
2 G D -2.8280
3 H D -3.3531
4 K D -3.9461
5 G D -2.8325
6 H D -2.4694
7 K D -2.4554
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Laboratory of Theory of Biopolymers 2018