Project name: obj1 [mutate: GR113C, TA114C, LD115C]

Status: done

Started: 2025-02-10 13:00:20
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LD115C,TA114C,GR113C
Energy difference between WT (input) and mutated protein (by FoldX) 11.1435 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-3.3326
Maximal score value
1.5458
Average score
-0.8081
Total score value
-96.9693

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9163
3 Q C -1.2800
4 L C 0.0000
5 V C 0.3037
6 E C 0.0000
7 S C -0.9377
8 G C -1.3636
9 G C -1.1379
10 G C -0.0034
11 L C 0.9666
12 V C -0.0546
13 Q C -1.3453
14 P C -1.4924
15 G C -1.4163
16 G C -0.9838
17 S C -1.2346
18 L C -0.9917
19 R C -2.1805
20 L C 0.0000
21 S C -0.5386
22 C C 0.0000
23 A C -0.2075
24 A C 0.0000
25 S C -0.2226
26 D C 0.0000
27 F C 1.5458
28 T C 0.2525
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1451
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.9185
40 A C -1.3843
41 P C -1.3168
42 G C -1.4423
43 K C -2.1552
44 G C -1.1108
45 L C 0.2545
46 E C -0.4440
47 W C 0.3134
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6492
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6605
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4751
88 A C -1.8924
89 E C -2.3461
90 D C 0.0000
91 T C -1.0219
92 A C 0.0000
93 I C -0.8434
94 Y C 0.0000
95 Y C -0.2871
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1893
101 D C -3.3326
102 G C -2.0861
103 F C -1.2304
104 N C -2.4279
105 K C -3.1836
106 G C -1.9050
107 F C -0.9816
108 D C -1.0969
109 Y C -0.2081
110 W C 0.3823
111 G C -0.4204
112 Q C -1.4132
113 R C -1.7240 mutated: GR113C
114 A C -1.5401 mutated: TA114C
115 D C -1.7973 mutated: LD115C
116 V C 0.0000
117 T C -0.4830
118 V C 0.0000
119 S C -0.7717
120 S C -1.0586
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Laboratory of Theory of Biopolymers 2018