Project name: PLO_Nb1

Status: done

Started: 2025-07-13 12:30:22
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Chain sequence(s) A: QVQLVESGGALVQPGGSLRLTCKPLGANFDTYAVAWFRQAPGKERVGSCLNKGDEDKYYSDAVKGRFTISWNDAKNMVFLEMTDLMADDTGVYYCAGGWFAPLIAAVTYGSPFEYANWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-3.1946
Maximal score value
2.5513
Average score
-0.5899
Total score value
-74.9166

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2306
2 V A -1.0084
3 Q A -0.9120
4 L A 0.0000
5 V A -0.0954
6 E A -0.6867
7 S A -0.8798
8 G A -0.9955
9 G A -0.6547
10 A A 0.0625
11 L A 1.0305
12 V A 0.0000
13 Q A -1.2792
14 P A -1.2634
15 G A -1.5497
16 G A -1.0476
17 S A -1.4185
18 L A -1.1014
19 R A -2.0519
20 L A 0.0000
21 T A -0.8031
22 C A 0.0000
23 K A -1.1234
24 P A -0.7838
25 L A 0.0669
26 G A -0.5695
27 A A -1.1683
28 N A -2.2601
29 F A 0.0000
30 D A -2.1049
31 T A 0.0000
32 Y A 1.3350
33 A A 0.0000
34 V A 0.0000
35 A A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -1.4483
40 A A 0.0000
41 P A -1.2857
42 G A -1.7363
43 K A -2.9326
44 E A -2.7747
45 R A -1.6423
46 V A 0.0000
47 G A 0.0000
48 S A 0.0000
49 C A 0.0000
50 L A 0.0000
51 N A -1.2792
52 K A -2.0477
53 G A -2.2087
54 D A -2.6766
55 E A -3.1946
56 D A -2.4069
57 K A -1.3683
58 Y A 0.1791
59 Y A -0.4203
60 S A 0.0000
61 D A -2.3304
62 A A -1.6034
63 V A 0.0000
64 K A -2.5050
65 G A -1.8689
66 R A -1.9164
67 F A 0.0000
68 T A -1.0568
69 I A 0.0000
70 S A -0.9281
71 W A -1.3009
72 N A -1.9838
73 D A -3.0299
74 A A -1.7706
75 K A -2.6752
76 N A -2.4039
77 M A -1.4708
78 V A 0.0000
79 F A 0.0000
80 L A 0.0000
81 E A -1.8630
82 M A 0.0000
83 T A -1.6194
84 D A -2.1235
85 L A 0.0000
86 M A -0.7619
87 A A -0.8316
88 D A -1.7479
89 D A 0.0000
90 T A -0.5533
91 G A -0.8493
92 V A -0.4365
93 Y A 0.0000
94 Y A -0.0557
95 C A 0.0000
96 A A 0.0000
97 G A 0.0000
98 G A 0.0000
99 W A 1.8484
100 F A 2.5513
101 A A 0.0000
102 P A 1.1037
103 L A 0.0000
104 I A 2.1866
105 A A 1.3886
106 A A 0.0000
107 V A 1.0351
108 T A 0.7133
109 Y A 1.2698
110 G A 0.6817
111 S A 0.6733
112 P A 0.6957
113 F A 1.6655
114 E A 1.0000
115 Y A 0.0000
116 A A 0.5534
117 N A 0.0000
118 W A 0.0978
119 G A -0.5424
120 Q A -1.2108
121 G A -0.7018
122 T A -0.8159
123 Q A -1.1040
124 V A 0.0000
125 T A -0.1003
126 V A 0.0000
127 S A -0.4833
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Laboratory of Theory of Biopolymers 2018