| Chain sequence(s) |
A: GTCNTPGCSCSSWPICTRDGLPTCGETCFG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:06)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.5973 | |
| 2 | T | A | -0.5371 | |
| 3 | C | A | -0.7226 | |
| 4 | N | A | -1.6289 | |
| 5 | T | A | -1.0549 | |
| 6 | P | A | -0.7784 | |
| 7 | G | A | -0.6993 | |
| 8 | C | A | -0.3091 | |
| 9 | S | A | -0.2518 | |
| 10 | C | A | 0.2946 | |
| 11 | S | A | -0.0845 | |
| 12 | S | A | 0.3164 | |
| 13 | W | A | 1.0521 | |
| 14 | P | A | 0.3779 | |
| 15 | I | A | 1.4588 | |
| 16 | C | A | 0.7936 | |
| 17 | T | A | -0.4763 | |
| 18 | R | A | -1.7092 | |
| 19 | D | A | -1.8231 | |
| 20 | G | A | -0.8571 | |
| 21 | L | A | 0.6140 | |
| 22 | P | A | -0.1093 | |
| 23 | T | A | -0.4317 | |
| 24 | C | A | -0.3582 | |
| 25 | G | A | -1.3818 | |
| 26 | E | A | -1.6864 | |
| 27 | T | A | -0.0206 | |
| 28 | C | A | 1.4171 | |
| 29 | F | A | 1.7136 | |
| 30 | G | A | 0.6766 |