Project name: query_structure

Status: done

Started: 2025-11-29 10:59:02
Settings
Chain sequence(s) A: VGINVKCKHSRQCLKPCKDAGMRFGKCTNGKCHCTPK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-3.2089
Maximal score value
1.5579
Average score
-1.5248
Total score value
-56.4184

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.5579
2 G A 0.6270
3 I A 0.0355
4 N A -0.9896
5 V A -0.5961
6 K A -2.5085
7 C A 0.0000
8 K A -3.1247
9 H A -2.9470
10 S A -2.7101
11 R A -3.2089
12 Q A -3.1391
13 C A 0.0000
14 L A -2.1571
15 K A -3.0837
16 P A -2.0347
17 C A 0.0000
18 K A -2.8339
19 D A -3.0764
20 A A -1.7492
21 G A -1.8539
22 M A -1.7240
23 R A -2.3309
24 F A -0.3760
25 G A -1.2186
26 K A -1.9853
27 C A -2.2959
28 T A -1.6567
29 N A -2.0102
30 G A -2.0224
31 K A -2.4887
32 C A 0.0000
33 H A -0.6926
34 C A 0.0000
35 T A -0.4786
36 P A -1.1547
37 K A -2.1913
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Laboratory of Theory of Biopolymers 2018