Project name: Lm big defensin [mutate: RA87A, EA94A]

Status: done

Started: 2026-02-23 05:46:08
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Chain sequence(s) A: MDKKNGFVLFFLVLLLSPHNIMAVNEEIKERHTRQVAIPPVFVGAVVSPYVFLALLALYGASVLIANRVQKASSDSHSCANNRGWCRSSCFSHEYVDWYYTAVCGGYFCCRPK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues EA94A,RA87A
Energy difference between WT (input) and mutated protein (by FoldX) 5.49602 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:58)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:19)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:06)
Show buried residues

Minimal score value
-4.5454
Maximal score value
5.7636
Average score
0.1489
Total score value
16.8235

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.5930
2 D A -2.9933
3 K A -3.2160
4 K A -2.8856
5 N A -1.8043
6 G A -0.1029
7 F A 2.2641
8 V A 2.6118
9 L A 4.0087
10 F A 5.3532
11 F A 5.7636
12 L A 5.3630
13 V A 5.3397
14 L A 4.8735
15 L A 4.5465
16 L A 3.4908
17 S A 1.5333
18 P A 0.6538
19 H A -0.6937
20 N A -0.5844
21 I A 1.0671
22 M A 0.5713
23 A A -0.2025
24 V A 0.1405
25 N A -1.0412
26 E A -2.9136
27 E A -3.2765
28 I A -2.1547
29 K A -3.9228
30 E A -4.5454
31 R A -4.2471
32 H A -3.3374
33 T A -2.6701
34 R A -2.6173
35 Q A -1.5332
36 V A 0.4800
37 A A 0.0677
38 I A 0.0000
39 P A 0.3217
40 P A 0.3373
41 V A 0.0000
42 F A 0.4794
43 V A 1.0211
44 G A -0.4772
45 A A -0.6050
46 V A -0.6219
47 V A 0.0000
48 S A 0.0000
49 P A 0.3240
50 Y A 1.5479
51 V A 0.0000
52 F A 1.1324
53 L A 2.2510
54 A A 1.7650
55 L A 0.0000
56 L A 1.8496
57 A A 1.5344
58 L A 2.2620
59 Y A 1.4969
60 G A 1.2367
61 A A 1.0479
62 S A 0.4574
63 V A 0.9855
64 L A 0.0000
65 I A 1.1999
66 A A 0.4887
67 N A -0.1936
68 R A -1.3353
69 V A 0.0000
70 Q A -1.7066
71 K A -1.8624
72 A A 0.0000
73 S A -0.8277
74 S A -0.6017
75 D A -0.5127
76 S A -0.3543
77 H A -0.4176
78 S A -0.8426
79 C A 0.0000
80 A A 0.0000
81 N A -2.2901
82 N A -2.5630
83 R A -2.6632
84 G A 0.0000
85 W A -0.2026
86 C A 0.0000
87 A A 0.4311 mutated: RA87A
88 S A -0.1021
89 S A 0.5329
90 C A 1.1115
91 F A 1.6250
92 S A 0.1277
93 H A -0.8651
94 A A -0.2681 mutated: EA94A
95 Y A 0.4716
96 V A 1.2716
97 D A 1.2754
98 W A 2.0556
99 Y A 1.9099
100 Y A 1.1917
101 T A 1.2532
102 A A 0.6951
103 V A 0.0000
104 C A 0.0000
105 G A 0.1047
106 G A -0.1227
107 Y A 0.3339
108 F A 1.2360
109 C A 0.0000
110 C A 0.0000
111 R A -0.7714
112 P A -1.1877
113 K A -1.9412
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Laboratory of Theory of Biopolymers 2018