Project name: cys-C

Status: done

Started: 2025-10-28 12:21:23
Settings
Chain sequence(s) A: GPMDASVEEEGVRRALDDFAVGEYNKASNDMMYHHSRACCQVVRRARKQIVAGVNYFLDVELCCRTTCCTKTQLDNNCCPPFHDQQPHHLKRKAFCSFQQIYAVPWQGTMTLSKSTCQDA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:06)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:06)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:06)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:06)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:06)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-3.5377
Maximal score value
2.2081
Average score
-0.8039
Total score value
-86.0161

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
12 G A -0.3427
13 P A -0.4015
14 M A -0.3425
15 D A -1.9841
16 A A -1.4169
17 S A -1.3947
18 V A -1.4526
19 E A -2.4206
20 E A -2.5376
21 E A -3.3061
22 G A -2.5450
23 V A 0.0000
24 R A -3.5377
25 R A -3.4041
26 A A 0.0000
27 L A -1.8032
28 D A -2.6073
29 F A -1.1974
30 A A 0.0000
31 V A -0.7807
32 G A -1.1401
33 E A -1.1122
34 Y A -0.6888
35 N A 0.0000
36 K A -2.1477
37 A A -1.1811
38 S A -1.0945
39 N A -1.3870
40 D A -0.6695
41 M A 0.6243
42 Y A 0.3795
43 H A -0.5931
44 S A 0.0000
45 R A -1.2707
46 A A -0.4284
47 C A -0.3617
48 Q A -0.6592
49 V A 0.4310
50 V A 0.8370
51 R A -0.8248
52 A A 0.0000
53 R A -1.5107
54 K A -0.4953
55 Q A 0.4732
56 I A 2.2081
57 V A 1.6259
58 A A 0.9072
59 G A 0.0000
60 V A 0.0000
61 N A 0.3910
62 Y A 0.0000
63 F A -0.8392
64 L A 0.0000
65 D A -0.0997
66 V A 0.0000
67 E A -0.5426
68 L A 0.0000
69 C A 0.0000
70 R A -1.2405
71 T A 0.0000
72 T A -0.0414
73 C A -0.1927
74 T A 0.0099
75 K A -0.6491
76 T A -0.6373
77 Q A -1.0381
80 L A 0.1421
81 D A -1.7642
82 N A -1.6739
83 C A -0.9263
84 P A -0.9494
85 F A -0.6521
86 H A -1.7299
87 D A -2.4908
88 Q A -2.5142
89 P A -2.3591
90 H A -2.2821
91 L A -1.6184
92 K A -2.4277
93 R A -3.2103
94 K A -2.3712
95 A A -1.5307
96 F A -0.3055
97 C A 0.0000
98 S A -0.4934
99 F A 0.0000
100 Q A -1.0997
101 I A 0.0000
102 Y A 0.4680
103 A A 0.0000
104 V A 0.3537
105 P A -0.0704
106 W A 0.3850
107 Q A -0.8539
108 G A -0.6892
109 T A -0.2386
110 M A -0.0215
111 T A 0.0071
112 L A -0.3821
113 S A -0.9651
114 K A -1.9129
115 S A -1.0644
116 T A -0.6144
117 C A -0.4412
118 Q A -1.8216
119 D A -2.2814
120 A A -1.1834
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Laboratory of Theory of Biopolymers 2018