| Chain sequence(s) |
H: QVQLQQPGAELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRSWRGNSFDYWGQGTTLTVSS
L: DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPFTFGSGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:07)
[INFO] Main: Simulation completed successfully. (00:01:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4166 | |
| 2 | V | H | -0.8308 | |
| 3 | Q | H | -1.6170 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0509 | |
| 6 | Q | H | -1.4039 | |
| 7 | P | H | -1.0205 | |
| 8 | G | H | -1.0054 | |
| 9 | A | H | -0.1565 | |
| 11 | E | H | -0.1447 | |
| 12 | L | H | 0.7339 | |
| 13 | V | H | 0.0000 | |
| 14 | R | H | -1.9303 | |
| 15 | P | H | -1.3972 | |
| 16 | G | H | -1.2267 | |
| 17 | A | H | -1.0118 | |
| 18 | S | H | -1.1136 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.3088 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.6469 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3643 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0637 | |
| 27 | G | H | -0.9298 | |
| 28 | Y | H | -0.3195 | |
| 29 | T | H | -0.0425 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.3776 | |
| 36 | S | H | -0.0179 | |
| 37 | Y | H | 0.1657 | |
| 38 | W | H | 0.4219 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.6383 | |
| 44 | Q | H | -0.9887 | |
| 45 | R | H | -1.5614 | |
| 46 | P | H | -1.1017 | |
| 47 | G | H | -1.3807 | |
| 48 | Q | H | -1.9304 | |
| 49 | G | H | -1.2230 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1996 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | N | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | Y | H | 0.3852 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.8184 | |
| 62 | D | H | -1.5056 | |
| 63 | S | H | -0.3781 | |
| 64 | Y | H | 0.7918 | |
| 65 | T | H | 0.5065 | |
| 66 | N | H | 0.1529 | |
| 67 | Y | H | -0.8142 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.8697 | |
| 70 | K | H | -3.0964 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.4454 | |
| 74 | D | H | -3.2551 | |
| 75 | K | H | -2.2957 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.9809 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.0676 | |
| 80 | V | H | -0.5442 | |
| 81 | D | H | -1.0539 | |
| 82 | K | H | -1.6113 | |
| 83 | S | H | -0.8993 | |
| 84 | S | H | -0.7691 | |
| 85 | S | H | -0.8345 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.2450 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.0982 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.1111 | |
| 93 | S | H | -0.9929 | |
| 94 | P | H | 0.0000 | |
| 95 | T | H | -1.2926 | |
| 96 | S | H | -1.3510 | |
| 97 | E | H | -1.9924 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7215 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1417 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | T | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | S | H | 0.0000 | |
| 108 | W | H | -0.0920 | |
| 109 | R | H | -1.5357 | |
| 110 | G | H | -0.8209 | |
| 113 | N | H | -0.5288 | |
| 114 | S | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.0695 | |
| 117 | Y | H | 0.2687 | |
| 118 | W | H | -0.4782 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7912 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1672 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1959 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7090 | |
| 128 | S | H | -0.8353 | |
| 1 | D | L | -1.3064 | |
| 2 | I | L | -0.2280 | |
| 3 | V | L | 0.9022 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.3191 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6810 | |
| 8 | P | L | -0.5358 | |
| 9 | S | L | -0.6307 | |
| 10 | S | L | -0.6639 | |
| 11 | L | L | -0.4610 | |
| 12 | T | L | -0.5929 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -1.3251 | |
| 15 | A | L | -1.3225 | |
| 16 | G | L | -1.3438 | |
| 17 | E | L | -2.0777 | |
| 18 | K | L | -2.3623 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.4989 | |
| 21 | M | L | 0.0000 | |
| 22 | S | L | -0.7310 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -1.7147 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.7955 | |
| 27 | Q | L | -1.4469 | |
| 28 | S | L | -1.0202 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | -0.8312 | |
| 31 | N | L | -1.3601 | |
| 32 | S | L | -1.4770 | |
| 33 | G | L | -1.6315 | |
| 34 | N | L | -2.3076 | |
| 35 | Q | L | -2.3382 | |
| 36 | K | L | -1.7167 | |
| 37 | N | L | -0.8176 | |
| 38 | Y | L | -0.1425 | |
| 39 | L | L | 0.0000 | |
| 40 | T | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.8064 | |
| 45 | K | L | -1.1631 | |
| 46 | P | L | -0.8071 | |
| 47 | G | L | -1.2663 | |
| 48 | Q | L | -1.7175 | |
| 49 | P | L | -1.1515 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1879 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1471 | |
| 56 | W | L | -0.2153 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5189 | |
| 66 | T | L | -0.4268 | |
| 67 | R | L | -1.2055 | |
| 68 | E | L | -0.9442 | |
| 69 | S | L | -0.7574 | |
| 70 | G | L | -0.9820 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.3663 | |
| 74 | D | L | -2.2097 | |
| 75 | R | L | -1.5844 | |
| 76 | F | L | 0.0000 | |
| 77 | T | L | -0.8060 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.5874 | |
| 80 | G | L | -0.9854 | |
| 83 | S | L | -1.0530 | |
| 84 | G | L | -1.1271 | |
| 85 | T | L | -1.4547 | |
| 86 | D | L | -1.9059 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6584 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5377 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5077 | |
| 93 | S | L | -1.5802 | |
| 94 | V | L | 0.0000 | |
| 95 | Q | L | -1.2602 | |
| 96 | A | L | -0.9696 | |
| 97 | E | L | -1.6041 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | 0.1172 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.1495 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | N | L | 0.0000 | |
| 107 | D | L | 0.0000 | |
| 108 | Y | L | 0.2541 | |
| 109 | S | L | 0.1443 | |
| 114 | Y | L | 0.5018 | |
| 115 | P | L | -0.3424 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | 0.0578 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | S | L | -0.5166 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0087 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.4127 | |
| 126 | I | L | -0.6925 | |
| 127 | K | L | -1.6373 |