Project name: Zolbetuximab

Status: done

Started: 2026-03-22 13:08:22
Settings
Chain sequence(s) H: QVQLQQPGAELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLTVDKSSSTAYMQLSSPTSEDSAVYYCTRSWRGNSFDYWGQGTTLTVSS
L: DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPFTFGSGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:09)
Show buried residues

Minimal score value
-3.4454
Maximal score value
0.9022
Average score
-0.607
Total score value
-140.2215

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4166
2 V H -0.8308
3 Q H -1.6170
4 L H 0.0000
5 Q H -2.0509
6 Q H -1.4039
7 P H -1.0205
8 G H -1.0054
9 A H -0.1565
11 E H -0.1447
12 L H 0.7339
13 V H 0.0000
14 R H -1.9303
15 P H -1.3972
16 G H -1.2267
17 A H -1.0118
18 S H -1.1136
19 V H 0.0000
20 K H -1.3088
21 L H 0.0000
22 S H -0.6469
23 C H 0.0000
24 K H -1.3643
25 A H 0.0000
26 S H -1.0637
27 G H -0.9298
28 Y H -0.3195
29 T H -0.0425
30 F H 0.0000
35 T H -0.3776
36 S H -0.0179
37 Y H 0.1657
38 W H 0.4219
39 I H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H -0.6383
44 Q H -0.9887
45 R H -1.5614
46 P H -1.1017
47 G H -1.3807
48 Q H -1.9304
49 G H -1.2230
50 L H 0.0000
51 E H -1.1996
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 N H 0.0000
56 I H 0.0000
57 Y H 0.3852
58 P H 0.0000
59 S H -0.8184
62 D H -1.5056
63 S H -0.3781
64 Y H 0.7918
65 T H 0.5065
66 N H 0.1529
67 Y H -0.8142
68 N H 0.0000
69 Q H -2.8697
70 K H -3.0964
71 F H 0.0000
72 K H -3.4454
74 D H -3.2551
75 K H -2.2957
76 A H 0.0000
77 T H -0.9809
78 L H 0.0000
79 T H -0.0676
80 V H -0.5442
81 D H -1.0539
82 K H -1.6113
83 S H -0.8993
84 S H -0.7691
85 S H -0.8345
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2450
89 M H 0.0000
90 Q H -1.0982
91 L H 0.0000
92 S H -1.1111
93 S H -0.9929
94 P H 0.0000
95 T H -1.2926
96 S H -1.3510
97 E H -1.9924
98 D H 0.0000
99 S H -0.7215
100 A H 0.0000
101 V H -0.1417
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 S H 0.0000
108 W H -0.0920
109 R H -1.5357
110 G H -0.8209
113 N H -0.5288
114 S H 0.0000
115 F H 0.0000
116 D H 0.0695
117 Y H 0.2687
118 W H -0.4782
119 G H 0.0000
120 Q H -1.7912
121 G H 0.0000
122 T H 0.0000
123 T H -0.1672
124 L H 0.0000
125 T H -0.1959
126 V H 0.0000
127 S H -0.7090
128 S H -0.8353
1 D L -1.3064
2 I L -0.2280
3 V L 0.9022
4 M L 0.0000
5 T L -0.3191
6 Q L 0.0000
7 S L -0.6810
8 P L -0.5358
9 S L -0.6307
10 S L -0.6639
11 L L -0.4610
12 T L -0.5929
13 V L 0.0000
14 T L -1.3251
15 A L -1.3225
16 G L -1.3438
17 E L -2.0777
18 K L -2.3623
19 V L 0.0000
20 T L -0.4989
21 M L 0.0000
22 S L -0.7310
23 C L 0.0000
24 K L -1.7147
25 S L 0.0000
26 S L -0.7955
27 Q L -1.4469
28 S L -1.0202
29 L L 0.0000
30 L L -0.8312
31 N L -1.3601
32 S L -1.4770
33 G L -1.6315
34 N L -2.3076
35 Q L -2.3382
36 K L -1.7167
37 N L -0.8176
38 Y L -0.1425
39 L L 0.0000
40 T L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.8064
45 K L -1.1631
46 P L -0.8071
47 G L -1.2663
48 Q L -1.7175
49 P L -1.1515
50 P L 0.0000
51 K L -1.1879
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1471
56 W L -0.2153
57 A L 0.0000
65 S L -0.5189
66 T L -0.4268
67 R L -1.2055
68 E L -0.9442
69 S L -0.7574
70 G L -0.9820
71 V L 0.0000
72 P L -1.3663
74 D L -2.2097
75 R L -1.5844
76 F L 0.0000
77 T L -0.8060
78 G L 0.0000
79 S L -0.5874
80 G L -0.9854
83 S L -1.0530
84 G L -1.1271
85 T L -1.4547
86 D L -1.9059
87 F L 0.0000
88 T L -0.6584
89 L L 0.0000
90 T L -0.5377
91 I L 0.0000
92 S L -1.5077
93 S L -1.5802
94 V L 0.0000
95 Q L -1.2602
96 A L -0.9696
97 E L -1.6041
98 D L 0.0000
99 L L 0.1172
100 A L 0.0000
101 V L -0.1495
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 D L 0.0000
108 Y L 0.2541
109 S L 0.1443
114 Y L 0.5018
115 P L -0.3424
116 F L 0.0000
117 T L 0.0578
118 F L 0.0000
119 G L 0.0000
120 S L -0.5166
121 G L 0.0000
122 T L 0.0000
123 K L -1.0087
124 L L 0.0000
125 E L -0.4127
126 I L -0.6925
127 K L -1.6373
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Laboratory of Theory of Biopolymers 2018