Project name: pep4

Status: done

Started: 2026-02-25 03:41:45
Settings
Chain sequence(s) A: MRACKTCCARCKCVPPGTYGNKEVCPCYARLKTHGNKPKCP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-3.6728
Maximal score value
1.4193
Average score
-1.1723
Total score value
-48.0628

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.2210
2 R A -1.8832
3 A A -1.2632
4 C A -0.9996
5 K A -2.2109
6 T A -1.7945
7 C A 0.0000
8 C A -0.9550
9 A A -1.5640
10 R A -2.3647
11 C A -1.2748
12 K A -1.7737
13 C A 0.2543
14 V A 1.4193
15 P A 0.0000
16 P A 0.2579
17 G A -0.2789
18 T A 0.1464
19 Y A 0.7061
20 G A -0.4059
21 N A -0.4201
22 K A -0.9812
23 E A -1.6523
24 V A 0.8107
25 C A 0.0000
26 P A -0.6369
27 C A -0.5249
28 Y A 0.0000
29 A A -1.6640
30 R A -2.5208
31 L A -2.3680
32 K A -3.6728
33 T A -2.5259
34 H A -2.4796
35 G A -2.5867
36 N A -3.0414
37 K A -3.4714
38 P A -2.9605
39 K A -2.6358
40 C A 0.0000
41 P A -0.5258
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Laboratory of Theory of Biopolymers 2018