Project name: 8GAD

Status: done

Started: 2026-07-29 03:17:45
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Chain sequence(s) A: SMEEEIEEAYDLVEEAEKTGDTSLLKKAKELLDKVAEEATKSGNPILLIRVIIILIKIVRNSGDPSVAALARELLEKLEEIAEKEGNRFIEAMGEALRTQIERAL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:17)
Show buried residues

Minimal score value
-4.8453
Maximal score value
1.0035
Average score
-1.6574
Total score value
-174.0267

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 S A -1.4696
1 M A -2.3396
2 E A -2.9947
3 E A -3.8255
4 E A -3.5410
5 I A 0.0000
6 E A -4.1122
7 E A -3.9671
8 A A 0.0000
9 Y A -2.3009
10 D A -3.5236
11 L A -2.9987
12 V A 0.0000
13 E A -3.7186
14 E A -3.5226
15 A A 0.0000
16 E A -4.2554
17 K A -3.6556
18 T A -2.4736
19 G A -2.3595
20 D A -2.2293
21 T A -1.7600
22 S A -1.3436
23 L A -2.1013
24 L A -2.1680
25 K A -2.7328
26 K A -2.7506
27 A A 0.0000
28 K A -2.2152
29 E A -2.9358
30 L A 0.0000
31 L A 0.0000
32 D A -3.0823
33 K A -3.5482
34 V A 0.0000
35 A A 0.0000
36 E A -3.7662
37 E A -3.6063
38 A A 0.0000
39 T A -2.2797
40 K A -2.9013
41 S A -1.9297
42 G A -1.3877
43 N A -0.6780
44 P A -0.0479
45 I A 1.0035
46 L A 0.0000
47 L A 0.0000
48 I A 0.4660
49 R A -0.4244
50 V A 0.0000
51 I A 0.0000
52 I A 0.1523
53 I A 0.0000
54 L A 0.0000
55 I A 0.0000
56 K A -2.0851
57 I A 0.0000
58 V A 0.0000
59 R A -2.6140
60 N A -2.4745
61 S A -1.6809
62 G A -1.2709
63 D A -1.3479
64 P A -0.7809
65 S A -0.7496
66 V A 0.0000
67 A A -1.4262
68 A A -1.2109
69 L A -1.4093
70 A A 0.0000
71 R A -3.2780
72 E A -3.1213
73 L A 0.0000
74 L A 0.0000
75 E A -3.0642
76 K A -2.8280
77 L A 0.0000
78 E A -3.7772
79 E A -4.1497
80 I A -3.3246
81 A A 0.0000
82 E A -4.8453
83 K A -4.1931
84 E A -4.0914
85 G A -3.2336
86 N A -2.5282
87 R A -2.2800
88 F A 0.3685
89 I A 0.0000
90 E A -2.4607
91 A A -0.8883
92 M A -0.4110
93 G A 0.0000
94 E A -1.5450
95 A A -0.8733
96 L A 0.0000
97 R A -2.0909
98 T A -1.8268
99 Q A -2.1936
100 I A 0.0000
101 E A -2.9423
102 R A -2.7387
103 A A -1.5295
104 L A 0.1944
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Laboratory of Theory of Biopolymers 2018