Project name: aaaa

Status: done

Started: 2026-03-19 06:35:07
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLDCKASGITFSNSGMHWVRQAPGKGLEWVAVIWYDGSKRYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCATNDDYWGQGTLVTVSSASTKGPSVFPLAPCSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK
L: STGEIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQSSNWPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
G: LDSPDRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPERFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAEL
input PDB
Selected Chain(s) H,L,G
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:04)
Show buried residues

Minimal score value
-4.5516
Maximal score value
2.0129
Average score
-0.8072
Total score value
-430.2203

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3866
2 V H -0.7631
3 Q H -1.5093
4 L H 0.0000
5 V H -0.4289
6 E H 0.0000
7 S H -0.5182
8 G H -0.6244
9 G H -0.2899
10 G H 0.2008
11 V H 0.4901
12 V H 0.0000
13 Q H -1.9405
14 P H -2.1410
15 G H -2.1819
16 R H -2.7983
17 S H -1.9899
18 L H -1.1900
19 R H -1.5184
20 L H 0.0000
21 D H -0.8096
22 C H 0.0000
23 K H -1.5593
24 A H 0.0000
25 S H -1.0159
26 G H -1.0543
27 I H -0.5774
28 T H -0.5195
29 F H 0.0000
30 S H -1.2207
31 N H -0.8951
32 S H 0.0000
33 G H 0.0000
34 M H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.7897
40 A H -1.1704
41 P H -0.9427
42 G H -1.5220
43 K H -2.3948
44 G H -1.6172
45 L H 0.0000
46 E H -1.1248
47 W H 0.0000
48 V H 0.0000
49 A H 0.0000
50 V H 0.0000
51 I H 0.0000
52 W H 0.0000
53 Y H -1.4591
54 D H -2.4248
55 G H -1.8002
56 S H -1.4499
57 K H -1.7966
58 R H -1.4407
59 Y H -0.6366
60 Y H -0.9292
61 A H 0.0000
62 D H -2.6210
63 S H -1.8232
64 V H 0.0000
65 K H -2.5434
66 G H -1.7748
67 R H -1.3980
68 F H 0.0000
69 T H -0.9134
70 I H 0.0000
71 S H -0.5182
72 R H -1.2585
73 D H -1.9095
74 N H -2.1026
75 S H -1.7437
76 K H -2.6601
77 N H -2.0695
78 T H -1.6051
79 L H 0.0000
80 F H -0.4407
81 L H 0.0000
82 Q H -1.1438
83 M H 0.0000
84 N H -1.7730
85 S H -1.7183
86 L H 0.0000
87 R H -2.5586
88 A H -1.7355
89 E H -2.2415
90 D H 0.0000
91 T H -0.6376
92 A H 0.0000
93 V H 0.2568
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 T H 0.0000
99 N H 0.0000
100 D H -0.5289
101 D H 0.0000
102 Y H -0.2600
103 W H -0.3963
104 G H 0.0000
105 Q H -1.4914
106 G H -0.6389
107 T H -0.0859
108 L H 0.4374
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -0.8458
113 S H -0.5794
114 A H -0.4839
115 S H -0.6047
116 T H -0.7811
117 K H -1.6727
118 G H -1.6113
119 P H -0.7456
120 S H -0.5168
121 V H 0.0000
122 F H 0.0000
123 P H -1.2497
124 L H 0.0000
125 A H -1.0294
126 P H 0.0000
127 C H 0.2994
134 S H -0.3635
135 T H -0.2303
136 A H 0.0000
137 A H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.6391
145 Y H 0.0000
146 F H 0.0000
147 P H 0.0000
148 E H -0.4412
149 P H -0.7716
150 V H -0.5614
151 T H -0.6090
152 V H -0.2117
153 S H -0.5149
154 W H 0.0000
155 N H -1.0101
156 S H -0.7883
157 G H -0.6091
158 A H -0.2795
159 L H -0.1297
160 T H -0.1981
161 S H -0.3888
162 G H -0.2760
163 V H 0.1992
164 H H 0.0000
165 T H -0.1252
166 F H 0.0000
167 P H -0.5011
168 A H 0.0680
169 V H 0.3275
170 L H 1.0421
171 Q H 0.2410
172 S H -0.0440
173 S H -0.2034
174 G H 0.0098
175 L H -0.0313
176 Y H 0.2362
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.1323
184 V H 0.0000
185 P H -0.5003
186 S H -0.2558
187 S H -0.5412
188 S H -0.6321
189 L H -0.6606
190 G H -0.9842
191 T H -0.8682
192 K H -1.6120
193 T H -1.4237
194 Y H 0.0000
195 T H -1.8510
196 C H 0.0000
197 N H -1.7331
198 V H 0.0000
199 D H -1.9872
200 H H 0.0000
201 K H -2.7578
202 P H -1.7520
203 S H -1.9878
204 N H -2.6179
205 T H -2.1685
206 K H -2.7287
207 V H -1.8907
208 D H -2.8113
209 K H -2.3935
210 R H -2.9540
211 V H 0.0000
212 E H -2.8452
213 S H -1.7262
214 K H -2.3060
-2 S L -0.3621
-1 T L -0.8811
0 G L -1.4820
1 E L -2.0888
2 I L 0.0000
3 V L 0.3819
4 L L 0.0000
5 T L -0.7620
6 Q L 0.0000
7 S L -0.7457
8 P L -0.2910
9 A L -0.3427
10 T L -0.1612
11 L L -0.0745
12 S L -0.4738
13 L L -0.8584
14 S L -1.1720
15 P L -1.5459
16 G L -1.7077
17 E L -2.1722
18 R L -2.5747
19 A L 0.0000
20 T L -0.6530
21 L L 0.0000
22 S L -0.9536
23 C L 0.0000
24 R L -2.4207
25 A L 0.0000
26 S L -1.1243
27 Q L -1.7067
28 S L -1.2107
29 V L 0.0000
30 S L -0.5668
31 S L -0.5009
32 Y L 0.1352
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.4047
40 P L -1.3941
41 G L -1.4806
42 Q L -2.1228
43 A L -1.4335
44 P L 0.0000
45 R L -1.3255
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L -1.0907
50 D L -1.5404
51 A L 0.0000
52 S L -1.3925
53 N L -1.9863
54 R L -1.8153
55 A L 0.0000
56 T L -0.6307
57 G L -0.5916
58 I L 0.0000
59 P L -0.4622
60 A L -0.3915
61 R L -0.8182
62 F L 0.0000
63 S L -0.7450
64 G L -0.9154
65 S L -1.0085
66 G L -1.3019
67 S L -1.1169
68 G L -1.0877
69 T L -1.8075
70 D L -2.3274
71 F L 0.0000
72 T L -0.8401
73 L L 0.0000
74 T L -0.6155
75 I L 0.0000
76 S L -1.3237
77 S L -1.6835
78 L L 0.0000
79 E L -2.1530
80 P L -1.6048
81 E L -2.2542
82 D L 0.0000
83 F L -0.5221
84 A L -0.3646
85 V L -0.0665
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 S L -0.3672
92 S L -0.5729
93 N L -1.1504
94 W L -0.5736
95 P L -0.8308
96 R L 0.0000
97 T L -0.2778
98 F L -0.0460
99 G L 0.0000
100 Q L -1.4160
101 G L -0.9056
102 T L 0.0000
103 K L -0.4483
104 V L 0.0000
105 E L 0.0000
106 I L -0.5208
107 K L -1.1965
108 R L -0.8810
109 T L -0.1129
110 V L 0.2870
111 A L -0.0700
112 A L -0.1470
113 P L 0.0000
114 S L -0.0952
115 V L 0.0000
116 F L 0.2559
117 I L 0.2456
118 F L 0.0000
119 P L -0.6491
120 P L -0.8140
121 S L -1.8172
122 D L -3.0973
123 E L -2.9500
124 Q L 0.0000
125 L L -2.1033
126 K L -2.8574
127 S L -1.8691
128 G L -1.1851
129 T L -1.1541
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.8404
139 F L 0.0000
140 Y L 0.0000
141 P L -1.7057
142 R L -2.9648
143 E L -3.1736
144 A L -2.2719
145 K L -2.4036
146 V L -1.1339
147 Q L -0.6579
148 W L 0.0000
149 K L -0.5801
150 V L 0.0000
151 D L -1.9545
152 N L -1.3810
153 A L -0.2762
154 L L 0.6648
155 Q L -0.2901
156 S L -0.6655
157 G L -1.3227
158 N L -1.6703
159 S L -1.5841
160 Q L -1.6238
161 E L -1.9459
162 S L -0.8830
163 V L -0.8852
164 T L 0.0000
165 E L -2.2312
166 Q L -1.7627
167 D L -1.7768
168 S L -1.6329
169 K L -2.1920
170 D L -1.5778
171 S L -1.5445
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.7948
179 L L 0.0000
180 T L -0.6870
181 L L -0.9568
182 S L -1.2323
183 K L -2.2480
184 A L -2.0927
185 D L -2.9878
186 Y L 0.0000
187 E L -3.5725
188 K L -3.7052
189 H L -2.9039
190 K L -2.6656
191 V L -1.2048
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.8857
196 V L 0.0000
197 T L -1.2389
198 H L 0.0000
199 Q L -1.7499
200 G L -0.4945
201 L L -0.2672
202 S L -0.4849
203 S L -0.4290
204 P L -0.5669
205 V L -0.0142
206 T L -0.4917
207 K L -0.6288
208 S L -0.5381
209 F L -0.9398
210 N L -1.9500
211 R L -2.3306
212 G L -2.0342
213 E L -2.4826
25 L G 0.2652
26 D G -1.2299
27 S G -0.7249
28 P G 0.0000
29 D G -1.1806
30 R G -1.2727
31 P G -0.7967
32 W G -1.0588
33 N G -1.7152
34 P G -1.0658
35 P G 0.0000
36 T G -0.4429
37 F G 0.0000
38 S G -0.1707
39 P G 0.1132
40 A G 0.1254
41 L G 1.0472
42 L G 1.4300
43 V G 2.0129
44 V G 0.3795
45 T G -1.6879
46 E G -3.7646
47 G G -3.7173
48 D G -3.7253
49 N G -2.7643
50 A G 0.0000
51 T G -0.3948
52 F G 0.0000
53 T G -0.2833
54 C G 0.0000
55 S G -0.7325
56 F G 0.0000
57 S G -1.2610
58 N G -1.5259
59 T G -0.9973
60 S G -1.0306
61 E G -1.7922
62 S G -0.5049
63 F G 0.3415
64 V G 0.5914
65 L G 0.0000
66 N G 0.0000
67 W G 0.0000
68 Y G -1.5585
69 R G -2.0996
70 M G -2.0604
71 S G -1.4974
72 P G -1.0768
73 S G -1.3298
74 N G -2.2817
75 Q G -2.3934
76 T G -2.3280
77 D G -3.0668
78 K G -2.4853
79 L G -1.4854
80 A G -1.3027
81 A G -0.7013
82 F G -0.3849
83 P G -0.7095
84 E G -1.8494
94 R G -2.1850
95 F G -1.2949
96 R G -2.0071
97 V G -0.9635
98 T G -0.9358
99 Q G -1.1981
100 L G -1.0957
101 P G -1.3303
102 N G -2.1344
103 G G -2.0673
104 R G -2.4096
105 D G -1.5514
106 F G 0.0000
107 H G -0.7115
108 M G 0.0000
109 S G 0.0000
110 V G 0.0000
111 V G -2.4849
112 R G -4.1057
113 A G 0.0000
114 R G -4.5516
115 R G -4.0849
116 N G -2.8702
117 D G 0.0000
118 S G -1.6920
119 G G -1.1796
120 T G -1.2100
121 Y G 0.0000
122 L G 0.0000
123 C G 0.0000
124 G G 0.0000
125 A G 0.0000
126 I G 0.8036
127 S G 0.4663
128 L G 0.6254
129 A G 0.0000
130 P G -0.5247
131 K G -0.9380
132 A G -0.1972
133 Q G 0.1359
134 I G 0.8775
135 K G -0.7567
136 E G -1.6461
137 S G 0.0000
138 L G 0.1787
139 R G -1.3380
140 A G 0.0000
141 E G -1.2902
142 L G 0.0745
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Laboratory of Theory of Biopolymers 2018