Project name: G2G2

Status: done

Started: 2025-06-25 14:03:26
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Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSSSQMGWFRQAPGKEREFVSAVTLVSRTHYADSVKGRFTISRDNAKNTLYLQMNSLRAEDTAMYYCVARAAWGTDYREQGYWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:50)
Show buried residues

Minimal score value
-2.886
Maximal score value
1.4249
Average score
-0.7329
Total score value
-88.6796

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9567
2 V H -1.0053
3 Q H -1.1265
4 L H 0.0000
5 L H 0.3222
6 E H -0.3426
7 S H -0.8553
8 G H -1.2457
9 G H -0.7264
11 G H 0.1905
12 L H 1.1287
13 V H 0.0170
14 Q H -1.2990
15 P H -1.6756
16 G H -1.2645
17 G H -1.0379
18 S H -1.1816
19 L H -0.9357
20 R H -2.1471
21 L H 0.0000
22 S H -0.6165
23 C H 0.0000
24 A H -0.3881
25 A H 0.0000
26 S H -0.8211
27 G H -1.0539
28 F H -0.3672
29 T H -0.2627
30 F H 0.0000
35 S H -0.1803
36 S H 0.1316
37 S H 0.0000
38 Q H -0.0384
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H -1.3986
45 A H -1.4605
46 P H -1.1249
47 G H -1.5514
48 K H -2.4289
49 E H -2.8860
50 R H -1.9722
51 E H -1.2809
52 F H -0.1128
53 V H 0.0000
54 S H 0.0000
55 A H -0.4541
56 V H 0.0000
57 T H 0.0028
58 L H 0.9900
59 V H 1.4249
63 S H -0.2969
64 R H -1.4492
65 T H -1.0001
66 H H -1.4340
67 Y H -1.0768
68 A H -1.3549
69 D H -2.5356
70 S H -1.7226
71 V H 0.0000
72 K H -2.7560
74 G H -1.7794
75 R H -1.6066
76 F H 0.0000
77 T H -0.9878
78 I H 0.0000
79 S H -0.7045
80 R H -0.7277
81 D H -1.5573
82 N H -1.8203
83 A H -1.4980
84 K H -2.3098
85 N H -1.8047
86 T H -1.1422
87 L H 0.0000
88 Y H -0.6719
89 L H 0.0000
90 Q H -1.3398
91 M H 0.0000
92 N H -1.3431
93 S H -1.1497
94 L H 0.0000
95 R H -2.1583
96 A H -1.6362
97 E H -2.2204
98 D H 0.0000
99 T H -0.7474
100 A H 0.0000
101 M H -0.3065
102 Y H 0.0000
103 Y H -0.0011
104 C H 0.0000
105 V H 0.0000
106 A H 0.0000
107 R H 0.0000
108 A H -0.5974
109 A H -0.8124
110 W H -0.6536
111 G H -0.8879
111A T H -0.9435
112A D H -1.8793
112 Y H -0.9108
113 R H -2.1659
114 E H -1.7154
115 Q H -1.4340
116 G H -0.6178
117 Y H 0.1791
118 W H 0.4112
119 G H -0.1440
120 Q H -1.0969
121 G H -0.5734
122 T H -0.6980
123 Q H -0.7325
124 V H 0.0000
125 T H -0.1745
126 V H 0.0000
127 S H -0.6440
128 S H -0.4591
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Laboratory of Theory of Biopolymers 2018