Project name: query_structure

Status: done

Started: 2026-03-17 00:40:43
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVESRTMYWYRQAPGKEREWVAAIRSHGKMTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCWVWVGSNHYKGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:56)
Show buried residues

Minimal score value
-3.5959
Maximal score value
0.9795
Average score
-0.914
Total score value
-105.1098

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5562
2 V A -1.3031
3 Q A -1.4703
4 L A 0.0000
5 V A 0.7690
6 E A 0.0000
7 S A -0.5726
8 G A -1.1796
9 G A -0.8296
10 G A -0.0813
11 L A 0.9795
12 V A 0.0000
13 Q A -1.3295
14 A A -1.4772
15 G A -1.3710
16 G A -0.9169
17 S A -1.2235
18 L A -0.9267
19 R A -2.1306
20 L A 0.0000
21 S A -0.3671
22 C A 0.0000
23 A A -0.1119
24 A A 0.0000
25 S A -0.8021
26 G A -1.0843
27 F A -0.7158
28 P A -1.2972
29 V A 0.0000
30 E A -2.5133
31 S A -1.4611
32 R A -1.0779
33 T A -0.5718
34 M A 0.0000
35 Y A 0.2469
36 W A 0.0000
37 Y A -0.1162
38 R A 0.0000
39 Q A -1.8860
40 A A -1.9987
41 P A -1.4195
42 G A -1.9696
43 K A -3.3609
44 E A -3.5959
45 R A -2.7866
46 E A -1.7441
47 W A -0.4293
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 R A -1.3409
53 S A -1.7985
54 H A -2.4019
55 G A -2.0714
56 K A -1.8611
57 M A -0.3995
58 T A 0.0479
59 Y A 0.2198
60 Y A -0.5929
61 A A 0.0000
62 D A -2.3502
63 S A -1.7615
64 V A 0.0000
65 K A -2.5514
66 G A -1.7728
67 R A -1.4851
68 F A 0.0000
69 T A -0.8050
70 I A 0.0000
71 S A -0.6359
72 R A -1.5674
73 D A -2.1216
74 N A -2.8340
75 A A -1.8808
76 K A -2.4627
77 N A -2.1048
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6701
81 L A 0.0000
82 Q A -1.2554
83 M A 0.0000
84 N A -1.3869
85 S A -1.2175
86 L A 0.0000
87 K A -2.4359
88 P A -1.9724
89 E A -2.3710
90 D A 0.0000
91 T A -0.9647
92 A A 0.0000
93 V A -0.5173
94 Y A 0.0000
95 Y A -0.4427
96 C A 0.0000
97 W A -0.5016
98 V A 0.0000
99 W A -0.0661
100 V A -0.1556
101 G A -0.6913
102 S A -0.9746
103 N A -1.5200
104 H A -1.4011
105 Y A -1.1447
106 K A -1.7511
107 G A -1.0480
108 Q A -1.4089
109 G A 0.0000
110 T A -0.6943
111 Q A -1.1412
112 V A 0.0000
113 T A -0.3510
114 V A 0.0000
115 S A -0.8127
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018