| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVESRTMYWYRQAPGKEREWVAAIRSHGKMTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCWVWVGSNHYKGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:55)
[INFO] Main: Simulation completed successfully. (00:01:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5562 | |
| 2 | V | A | -1.3031 | |
| 3 | Q | A | -1.4703 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7690 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5726 | |
| 8 | G | A | -1.1796 | |
| 9 | G | A | -0.8296 | |
| 10 | G | A | -0.0813 | |
| 11 | L | A | 0.9795 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3295 | |
| 14 | A | A | -1.4772 | |
| 15 | G | A | -1.3710 | |
| 16 | G | A | -0.9169 | |
| 17 | S | A | -1.2235 | |
| 18 | L | A | -0.9267 | |
| 19 | R | A | -2.1306 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3671 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1119 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8021 | |
| 26 | G | A | -1.0843 | |
| 27 | F | A | -0.7158 | |
| 28 | P | A | -1.2972 | |
| 29 | V | A | 0.0000 | |
| 30 | E | A | -2.5133 | |
| 31 | S | A | -1.4611 | |
| 32 | R | A | -1.0779 | |
| 33 | T | A | -0.5718 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.2469 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.1162 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8860 | |
| 40 | A | A | -1.9987 | |
| 41 | P | A | -1.4195 | |
| 42 | G | A | -1.9696 | |
| 43 | K | A | -3.3609 | |
| 44 | E | A | -3.5959 | |
| 45 | R | A | -2.7866 | |
| 46 | E | A | -1.7441 | |
| 47 | W | A | -0.4293 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | R | A | -1.3409 | |
| 53 | S | A | -1.7985 | |
| 54 | H | A | -2.4019 | |
| 55 | G | A | -2.0714 | |
| 56 | K | A | -1.8611 | |
| 57 | M | A | -0.3995 | |
| 58 | T | A | 0.0479 | |
| 59 | Y | A | 0.2198 | |
| 60 | Y | A | -0.5929 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3502 | |
| 63 | S | A | -1.7615 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5514 | |
| 66 | G | A | -1.7728 | |
| 67 | R | A | -1.4851 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8050 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6359 | |
| 72 | R | A | -1.5674 | |
| 73 | D | A | -2.1216 | |
| 74 | N | A | -2.8340 | |
| 75 | A | A | -1.8808 | |
| 76 | K | A | -2.4627 | |
| 77 | N | A | -2.1048 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6701 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2554 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3869 | |
| 85 | S | A | -1.2175 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4359 | |
| 88 | P | A | -1.9724 | |
| 89 | E | A | -2.3710 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9647 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.5173 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4427 | |
| 96 | C | A | 0.0000 | |
| 97 | W | A | -0.5016 | |
| 98 | V | A | 0.0000 | |
| 99 | W | A | -0.0661 | |
| 100 | V | A | -0.1556 | |
| 101 | G | A | -0.6913 | |
| 102 | S | A | -0.9746 | |
| 103 | N | A | -1.5200 | |
| 104 | H | A | -1.4011 | |
| 105 | Y | A | -1.1447 | |
| 106 | K | A | -1.7511 | |
| 107 | G | A | -1.0480 | |
| 108 | Q | A | -1.4089 | |
| 109 | G | A | 0.0000 | |
| 110 | T | A | -0.6943 | |
| 111 | Q | A | -1.1412 | |
| 112 | V | A | 0.0000 | |
| 113 | T | A | -0.3510 | |
| 114 | V | A | 0.0000 | |
| 115 | S | A | -0.8127 |