Project name: NTP

Status: done

Started: 2025-10-08 21:27:02
Settings
Chain sequence(s) B: ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKG
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-3.9385
Maximal score value
3.0145
Average score
-0.1097
Total score value
-8.6691

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A B -0.7236
2 R B -1.2169
3 P B -0.5636
4 C B 0.7326
5 I B 2.4946
7 K B 0.3451
8 S B 1.0478
9 F B 2.1093
10 G B 1.0484
11 Y B 1.7649
12 S B 0.5182
13 S B 0.6295
14 V B 2.3733
15 V B 2.7575
16 C B 2.5071
17 V B 1.9470
18 C B 1.1560
19 N B -0.4875
20 A B -0.1890
21 T B 0.1189
22 Y B 0.3388
23 C B 0.3635
24 D B -0.1377
25 S B -0.2411
26 F B 0.5360
27 D B -1.0454
28 P B -0.6501
29 P B -0.1951
30 T B 0.4098
31 F B 2.1794
32 P B 1.5479
33 A B 1.2991
34 L B 2.0035
35 G B 0.9589
36 T B 1.5328
37 F B 1.7538
38 S B 0.4275
39 R B -1.2978
40 Y B -0.8366
41 E B -2.0167
42 S B -2.3392
43 T B -2.4967
44 R B -2.6498
45 S B -1.9018
46 G B -2.0753
47 R B -3.9385
48 R B -3.4585
49 M B -1.6872
50 E B -2.6186
51 L B -0.6436
52 S B -0.2482
53 M B 0.6468
54 G B 0.4506
55 P B 0.8991
56 I B 1.4967
57 Q B -0.8584
58 A B -0.9165
59 N B -1.8816
60 H B -1.9906
61 T B -1.0725
62 G B -0.7427
63 T B -0.1103
64 G B 0.7131
65 L B 2.3630
66 L B 3.0145
67 L B 2.8305
68 T B 1.6844
69 L B 1.1919
70 Q B -1.4279
71 P B -1.9937
72 E B -2.9053
73 Q B -2.8775
74 K B -2.4744
75 F B -0.2971
76 Q B -1.2425
77 K B -1.6942
78 V B -0.2666
79 K B -1.4456
80 G B -1.0050
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Laboratory of Theory of Biopolymers 2018