Project name: P.sativum1371 [mutate: VT53A, VT83A]

Status: done

Started: 2026-02-26 20:22:26
Settings
Chain sequence(s) A: MGFTEKQEALVNSSWELFKQNPSYSVLFYTIILKKAPAAKGMFSFLKDSAEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDATLGAIHIQKGVVDPHFVVVKEALLETIKEASGEKWSEELSTAWEVAYEGLASAIKKAMN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VT83A,VT53A
Energy difference between WT (input) and mutated protein (by FoldX) 0.154142 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:02:42)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:46)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:46)
Show buried residues

Minimal score value
-3.4669
Maximal score value
1.0366
Average score
-1.0077
Total score value
-147.1204

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8143
2 G A -0.6071
3 F A -1.1001
4 T A -1.7210
5 E A -2.9586
6 K A -2.9742
7 Q A 0.0000
8 E A -1.7859
9 A A -1.1608
10 L A -1.1758
11 V A 0.0000
12 N A -1.1419
13 S A -1.0293
14 S A 0.0000
15 W A 0.0000
16 E A -2.6618
17 L A -1.8493
18 F A 0.0000
19 K A -2.9666
20 Q A -2.5418
21 N A -1.8578
22 P A -1.5255
23 S A -0.8495
24 Y A -0.8781
25 S A 0.0000
26 V A -0.2323
27 L A -0.0872
28 F A 0.0000
29 Y A 0.0000
30 T A -0.5538
31 I A -0.9488
32 I A 0.0000
33 L A -1.3348
34 K A -2.2740
35 K A -2.1615
36 A A -1.2000
37 P A -1.1104
38 A A -0.5877
39 A A 0.0000
40 K A -1.5024
41 G A -1.4730
42 M A -0.9901
43 F A 0.0000
44 S A -1.3590
45 F A -1.4341
46 L A 0.0000
47 K A -2.9304
48 D A -2.8978
49 S A -1.8868
50 A A -1.5028
51 E A -2.3042
52 V A -1.2785
53 T A -1.2074 mutated: VT53A
54 D A -2.1437
55 S A -1.5463
56 P A -1.5723
57 K A -2.3062
58 L A 0.0000
59 Q A -2.0184
60 A A -1.6647
61 H A -1.6171
62 A A 0.0000
63 E A -2.2878
64 K A -1.9675
65 V A -0.8030
66 F A 0.0000
67 G A -1.3883
68 M A -0.8911
69 V A 0.0000
70 H A -0.9569
71 D A -1.4828
72 S A 0.0000
73 A A 0.0000
74 I A -1.1050
75 Q A -1.3917
76 L A -1.5305
77 R A -2.5515
78 A A -1.2960
79 S A -1.3720
80 G A -1.7208
81 E A -2.2623
82 V A -1.4146
83 T A -0.7428 mutated: VT83A
84 L A -0.3528
85 G A -0.6779
86 D A -0.8477
87 A A -0.1948
88 T A 0.0861
89 L A 0.3310
90 G A 0.0000
91 A A 0.5662
92 I A 0.9781
93 H A 0.5731
94 I A 0.9658
95 Q A -0.5747
96 K A -0.8855
97 G A -0.2708
98 V A 0.0521
99 V A 0.2781
100 D A -1.1703
101 P A -0.2028
102 H A -0.0521
103 F A 0.0000
104 V A 1.0366
105 V A 0.0452
106 V A 0.2146
107 K A -0.5198
108 E A -1.0350
109 A A 0.0000
110 L A 0.0000
111 L A -1.7071
112 E A -2.7791
113 T A 0.0000
114 I A 0.0000
115 K A -3.4669
116 E A -3.2649
117 A A 0.0000
118 S A 0.0000
119 G A -2.6388
120 E A -3.1440
121 K A -2.9448
122 W A -2.5412
123 S A -2.3073
124 E A -2.8123
125 E A -2.9115
126 L A 0.0000
127 S A -1.7123
128 T A -1.1744
129 A A 0.0000
130 W A 0.0000
131 E A -1.1383
132 V A -0.1476
133 A A 0.0000
134 Y A 0.0000
135 E A -1.5891
136 G A -1.2216
137 L A 0.0000
138 A A 0.0000
139 S A -1.2519
140 A A 0.0000
141 I A 0.0000
142 K A -1.7247
143 K A -2.3732
144 A A -1.0849
145 M A -0.6274
146 N A -1.6387
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Laboratory of Theory of Biopolymers 2018