Project name: Acylphosphatase

Status: done

Started: 2025-07-27 17:45:09
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Chain sequence(s) A: TLISVDYEIFGKVQGVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKANFNNEKVILKLDYSDFQIVK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.7096
Maximal score value
1.0984
Average score
-1.1784
Total score value
-110.7687

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 T A 0.7048
6 L A 0.9055
7 I A 0.0000
8 S A 0.0000
9 V A 0.0000
10 D A -1.8123
11 Y A 0.0000
12 E A -1.2264
13 I A 0.0000
14 F A -1.9799
15 G A -2.2025
16 K A -2.8213
17 V A 0.0000
18 Q A -1.5144
19 G A -0.8994
20 V A 0.0000
21 F A 0.1819
22 F A 0.0000
23 R A -2.3079
24 K A -2.1084
25 H A -1.5033
26 T A 0.0000
27 Q A -2.3220
28 A A -2.1271
29 E A -2.2104
30 G A 0.0000
31 K A -3.1714
32 K A -2.9005
33 L A 0.0000
34 G A -1.9000
35 L A 0.0000
36 V A -1.0138
37 G A 0.0000
38 W A -0.3642
39 V A 0.0000
40 Q A -1.3582
41 N A -2.2661
42 T A -2.2222
43 D A -2.9819
44 R A -2.9045
45 G A -2.2755
46 T A 0.0000
47 V A 0.0000
48 Q A -0.9878
49 G A 0.0000
50 Q A -0.7831
51 L A 0.0000
52 Q A 0.0000
53 G A 0.0000
54 P A 0.1966
55 I A 0.2832
56 S A -0.7442
57 K A -1.5023
58 V A 0.0000
59 R A -2.0386
60 H A -2.3121
61 M A 0.0000
62 Q A -2.4366
63 E A -3.4204
64 W A 0.0000
65 L A 0.0000
66 E A -3.7096
67 T A -2.9032
68 R A -3.0140
69 G A 0.0000
70 S A 0.0000
71 P A -1.2836
72 K A -2.1862
73 S A -2.2136
74 H A -3.0728
75 I A -2.9185
76 D A -3.2537
77 K A -3.0770
78 A A -2.1991
79 N A -1.4844
80 F A -1.6020
81 N A -2.6094
82 N A -2.7974
83 E A -2.6634
84 K A -1.5679
85 V A 1.0332
86 I A 0.7874
87 L A 1.0984
88 K A -0.5576
89 L A -0.4539
90 D A -1.5797
91 Y A -1.0155
92 S A -0.9249
93 D A -1.8528
94 F A 0.0000
95 Q A -1.4522
96 I A -0.9681
97 V A -0.3676
98 K A -1.6129
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Laboratory of Theory of Biopolymers 2018