Project name: HIMA SREE

Status: done

Started: 2024-07-08 06:13:28
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Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:16)
Show buried residues

Minimal score value
-4.2899
Maximal score value
1.5152
Average score
-1.063
Total score value
-138.1872

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.3890
2 V A -0.2587
3 F A 0.0000
4 E A -2.1260
5 R A -1.8433
6 C A -1.5101
7 E A -1.8673
8 L A 0.0000
9 A A 0.0000
10 R A -2.2277
11 T A -1.6993
12 L A 0.0000
13 K A -2.4017
14 R A -2.5710
15 L A -1.2743
16 G A -1.4321
17 M A 0.0000
18 D A -2.1562
19 G A -1.7470
20 Y A -1.7204
21 R A -2.6469
22 G A -1.6477
23 I A 0.0000
24 S A -1.2781
25 L A 0.0000
26 A A -1.2026
27 N A -1.1510
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.0454
34 W A -0.5369
35 E A -0.2435
36 S A -0.7251
37 G A -0.6122
38 Y A 0.0000
39 N A -1.3095
40 T A 0.0000
41 R A -2.5086
42 A A -1.3487
43 T A -0.9784
44 N A -0.8178
45 Y A -0.2250
46 N A -1.2948
47 A A -1.2491
48 G A -1.6721
49 D A -2.6690
50 R A -2.9420
51 S A 0.0000
52 T A 0.0000
53 D A -0.6576
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 F A 0.0000
58 Q A 0.0000
59 I A 0.0000
60 N A -0.4610
61 S A 0.0000
62 R A -0.6868
63 Y A 1.0995
64 W A 0.2289
65 C A 0.0000
66 N A -1.1658
67 D A -1.5881
68 G A -1.7961
69 K A -2.6031
70 T A 0.0000
71 P A -1.4180
72 G A -0.3142
73 A A 0.0469
74 V A 1.5152
75 N A 0.1572
76 A A 0.1845
77 C A -0.4424
78 H A -0.8074
79 L A -0.7324
80 S A -0.8205
81 C A 0.0000
82 S A -0.7225
83 A A -1.0260
84 L A 0.0000
85 L A -2.0108
86 Q A -3.1192
87 D A -3.5127
88 N A -2.8833
89 I A 0.0000
90 A A -1.0963
91 D A -1.3467
92 A A 0.0000
93 V A 0.0000
94 A A -0.5630
95 C A 0.0000
96 A A 0.0000
97 K A -1.6241
98 R A -1.7487
99 V A 0.0000
100 V A 0.0000
101 R A -3.0519
102 D A -2.2177
103 P A -1.4595
104 Q A -1.6064
105 G A -2.0637
106 I A 0.0000
107 R A -1.8388
108 A A -0.6956
109 W A 0.0000
110 V A 0.3649
111 A A -0.6980
112 W A -1.5705
113 R A -2.8063
114 N A -2.7949
115 R A -3.1128
116 C A 0.0000
117 Q A -3.1888
118 N A -3.3632
119 R A -4.2899
120 D A -3.8969
121 V A -3.0646
122 R A -3.3782
123 Q A -2.7804
124 Y A 0.0000
125 V A -1.4465
126 Q A -2.1332
127 G A -1.1617
128 C A 0.0000
129 G A -0.4878
130 V A -0.2018
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Laboratory of Theory of Biopolymers 2018