Project name: RFC23

Status: done

Started: 2025-07-15 15:44:07
Settings
Chain sequence(s) A: NTLTKSYNLNISAFTGNGTINYTRKVVLKATGGTDQTSPDMNITVNSTLSGGVWTSTAVTKSYTLTVTAPAGATITTEETGGLSIKSTGAISNLTIDELTTTTTTAA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-2.7472
Maximal score value
1.3946
Average score
-0.5378
Total score value
-57.5428

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.3643
2 T A -0.2043
3 L A 0.0000
4 T A -0.2297
5 K A -0.1763
6 S A 0.1689
7 Y A 0.0000
8 N A -0.9266
9 L A 0.0000
10 N A -1.4474
11 I A 0.0000
12 S A -0.3852
13 A A -0.2898
14 F A 0.0000
15 T A 0.1133
16 G A 0.0005
17 N A -0.5325
18 G A -0.8415
19 T A -0.8003
20 I A 0.0000
21 N A -0.3677
22 Y A 0.0000
23 T A -1.1646
24 R A -1.7104
25 K A -2.3263
26 V A 0.0000
27 V A -1.5162
28 L A 0.0000
29 K A -1.7830
30 A A 0.0000
31 T A -0.8621
32 G A -1.0153
33 G A -1.1900
34 T A -1.4942
35 D A -2.4108
36 Q A -1.5559
37 T A -1.2849
38 S A 0.0000
39 P A -1.2048
40 D A -2.4041
41 M A -1.8119
42 N A -1.9912
43 I A -0.9578
44 T A -0.6756
45 V A 0.0000
46 N A -1.2693
47 S A -0.2981
48 T A 0.2378
49 L A 1.0976
50 S A 0.4419
51 G A -0.0766
52 G A 0.2739
53 V A 1.3946
54 W A 0.9847
55 T A 0.3323
56 S A -0.2264
57 T A -0.2441
58 A A 0.1027
59 V A -0.1715
60 T A -1.2364
61 K A -1.5931
62 S A -0.6746
63 Y A 0.3004
64 T A 0.1569
65 L A 0.0000
66 T A -0.4686
67 V A 0.0000
68 T A -0.6155
69 A A 0.0000
70 P A -0.5530
71 A A -0.4015
72 G A -0.5592
73 A A -0.4388
74 T A -0.2867
75 I A -0.2993
76 T A -0.8226
77 T A -1.2472
78 E A -2.3737
79 E A -2.7472
80 T A -1.7785
81 G A -1.2960
82 G A -0.4345
83 L A 0.8113
84 S A 0.4816
85 I A 0.9267
86 K A -0.9806
87 S A -0.7878
88 T A -0.8064
89 G A -0.7563
90 A A -0.3262
91 I A -0.1253
92 S A -0.6263
93 N A -1.1816
94 L A -0.4123
95 T A -0.6598
96 I A -0.6650
97 D A -2.0473
98 E A -1.7225
99 L A 0.2584
100 T A 0.3162
101 T A 0.1407
102 T A -0.0804
103 T A -0.2099
104 T A -0.2315
105 T A -0.1827
106 A A -0.1239
107 A A -0.1203
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018