| Chain sequence(s) |
A: APEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | YF4A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.0915898 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:53)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:57)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:48)
[INFO] Main: Simulation completed successfully. (00:01:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.0862 | |
| 2 | P | A | -0.5480 | |
| 3 | E | A | -1.1367 | |
| 4 | F | A | 0.6309 | mutated: YF4A |
| 5 | V | A | 0.0000 | |
| 6 | D | A | -1.5188 | |
| 7 | W | A | -1.7103 | |
| 8 | R | A | -2.4891 | |
| 9 | Q | A | -2.7750 | |
| 10 | K | A | -2.8455 | |
| 11 | G | A | -1.8038 | |
| 12 | A | A | 0.0000 | |
| 13 | V | A | -0.7761 | |
| 14 | T | A | 0.0000 | |
| 15 | P | A | -0.3445 | |
| 16 | V | A | -0.4376 | |
| 17 | K | A | -0.8509 | |
| 18 | N | A | -1.5649 | |
| 19 | Q | A | -1.1728 | |
| 20 | G | A | -1.2004 | |
| 21 | S | A | -0.6801 | |
| 22 | C | A | 0.0000 | |
| 23 | G | A | -0.7343 | |
| 24 | S | A | 0.0000 | |
| 25 | C | A | -0.4265 | |
| 26 | W | A | 0.0000 | |
| 27 | A | A | 0.0000 | |
| 28 | F | A | 0.0000 | |
| 29 | S | A | 0.0000 | |
| 30 | A | A | 0.0000 | |
| 31 | V | A | 0.0000 | |
| 32 | V | A | 0.0000 | |
| 33 | T | A | 0.0000 | |
| 34 | I | A | 0.0000 | |
| 35 | E | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | I | A | 0.0000 | |
| 38 | I | A | 0.0000 | |
| 39 | K | A | -1.3097 | |
| 40 | I | A | -1.2494 | |
| 41 | R | A | -2.3447 | |
| 42 | T | A | -1.6496 | |
| 43 | G | A | -1.5552 | |
| 44 | N | A | -1.6124 | |
| 45 | L | A | -0.3478 | |
| 46 | N | A | -0.4688 | |
| 47 | Q | A | -0.6761 | |
| 48 | Y | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | E | A | 0.0000 | |
| 51 | Q | A | 0.0000 | |
| 52 | E | A | 0.0000 | |
| 53 | L | A | 0.0000 | |
| 54 | L | A | 0.0000 | |
| 55 | D | A | 0.0000 | |
| 56 | C | A | 0.0000 | |
| 57 | D | A | 0.0000 | |
| 58 | R | A | -2.3580 | |
| 59 | R | A | -2.3990 | |
| 60 | S | A | 0.0000 | |
| 61 | Y | A | -0.1213 | |
| 62 | G | A | 0.0000 | |
| 63 | C | A | -0.6705 | |
| 64 | N | A | -1.0517 | |
| 65 | G | A | -0.6015 | |
| 66 | G | A | -0.4116 | |
| 67 | Y | A | 0.3541 | |
| 68 | P | A | 0.0000 | |
| 69 | W | A | 0.0840 | |
| 70 | S | A | 0.0000 | |
| 71 | A | A | 0.0000 | |
| 72 | L | A | 0.0000 | |
| 73 | Q | A | -1.0749 | |
| 74 | L | A | 0.0000 | |
| 75 | V | A | 0.0000 | |
| 76 | A | A | -1.5246 | |
| 77 | Q | A | -1.5044 | |
| 78 | Y | A | -0.4845 | |
| 79 | G | A | 0.0000 | |
| 80 | I | A | 0.0000 | |
| 81 | H | A | 0.0000 | |
| 82 | Y | A | -0.1566 | |
| 83 | R | A | -0.9053 | |
| 84 | N | A | -1.3880 | |
| 85 | T | A | -0.8663 | |
| 86 | Y | A | 0.0000 | |
| 87 | P | A | -1.1675 | |
| 88 | Y | A | -1.3311 | |
| 89 | E | A | -2.0096 | |
| 90 | G | A | -1.3195 | |
| 91 | V | A | -0.8560 | |
| 92 | Q | A | -1.5690 | |
| 93 | R | A | -1.6794 | |
| 94 | Y | A | -0.0481 | |
| 95 | C | A | -1.0857 | |
| 96 | R | A | -2.2969 | |
| 97 | S | A | 0.0000 | |
| 98 | R | A | -3.2292 | |
| 99 | E | A | -3.5522 | |
| 100 | K | A | -2.7656 | |
| 101 | G | A | -1.9617 | |
| 102 | P | A | -0.9194 | |
| 103 | Y | A | -0.2150 | |
| 104 | A | A | -0.0054 | |
| 105 | A | A | 0.0000 | |
| 106 | K | A | -1.6065 | |
| 107 | T | A | 0.0000 | |
| 108 | D | A | -2.5185 | |
| 109 | G | A | -1.7502 | |
| 110 | V | A | -1.2494 | |
| 111 | R | A | -2.2102 | |
| 112 | Q | A | -2.0883 | |
| 113 | V | A | -1.3202 | |
| 114 | Q | A | -1.7526 | |
| 115 | P | A | -0.7279 | |
| 116 | Y | A | -0.1812 | |
| 117 | N | A | -1.1164 | |
| 118 | Q | A | -0.7966 | |
| 119 | G | A | -0.3730 | |
| 120 | A | A | -0.1912 | |
| 121 | L | A | 0.0000 | |
| 122 | L | A | 0.0000 | |
| 123 | Y | A | 0.9346 | |
| 124 | S | A | 0.0000 | |
| 125 | I | A | 0.0000 | |
| 126 | A | A | -0.0616 | |
| 127 | N | A | -0.9209 | |
| 128 | Q | A | -0.4300 | |
| 129 | P | A | 0.0000 | |
| 130 | V | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | L | A | 0.0000 | |
| 135 | Q | A | -1.2664 | |
| 136 | A | A | 0.0000 | |
| 137 | A | A | -1.1770 | |
| 138 | G | A | -1.7508 | |
| 139 | K | A | -2.4187 | |
| 140 | D | A | -2.0921 | |
| 141 | F | A | 0.0000 | |
| 142 | Q | A | -1.7241 | |
| 143 | L | A | -0.8589 | |
| 144 | Y | A | 0.0000 | |
| 145 | R | A | -2.8755 | |
| 146 | G | A | -2.0769 | |
| 147 | G | A | -0.6570 | |
| 148 | I | A | 0.7468 | |
| 149 | F | A | 0.0000 | |
| 150 | V | A | 1.5317 | |
| 151 | G | A | 0.3159 | |
| 152 | P | A | -0.2059 | |
| 153 | C | A | -0.6386 | |
| 154 | G | A | -1.0960 | |
| 155 | N | A | -1.9970 | |
| 156 | K | A | -2.4374 | |
| 157 | V | A | -1.3757 | |
| 158 | D | A | -1.5657 | |
| 159 | H | A | 0.0000 | |
| 160 | A | A | 0.0000 | |
| 161 | V | A | 0.0000 | |
| 162 | A | A | 0.0000 | |
| 163 | A | A | 0.0000 | |
| 164 | V | A | 0.0000 | |
| 165 | G | A | 0.0000 | |
| 166 | Y | A | 0.0000 | |
| 167 | G | A | 0.0000 | |
| 168 | P | A | -0.9716 | |
| 169 | N | A | -1.4616 | |
| 170 | Y | A | -0.6614 | |
| 171 | I | A | 0.0000 | |
| 172 | L | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | K | A | 0.0000 | |
| 175 | N | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | W | A | -0.8470 | |
| 178 | G | A | -1.0712 | |
| 179 | T | A | -1.6310 | |
| 180 | G | A | -1.6263 | |
| 181 | W | A | 0.0000 | |
| 182 | G | A | -2.3951 | |
| 183 | E | A | -3.3651 | |
| 184 | N | A | -2.6302 | |
| 185 | G | A | 0.0000 | |
| 186 | Y | A | 0.0000 | |
| 187 | I | A | 0.0000 | |
| 188 | R | A | -0.7584 | |
| 189 | I | A | 0.0000 | |
| 190 | K | A | -0.6905 | |
| 191 | R | A | -1.1792 | |
| 192 | G | A | -1.4195 | |
| 193 | T | A | -0.9517 | |
| 194 | G | A | -1.0813 | |
| 195 | N | A | -1.1537 | |
| 196 | S | A | -0.5955 | |
| 197 | Y | A | -0.0029 | |
| 198 | G | A | 0.0000 | |
| 199 | V | A | -0.0654 | |
| 200 | C | A | 0.0000 | |
| 201 | G | A | 0.0000 | |
| 202 | L | A | 0.0000 | |
| 203 | Y | A | 0.0000 | |
| 204 | T | A | -0.2703 | |
| 205 | S | A | -0.1796 | |
| 206 | S | A | 0.0000 | |
| 207 | F | A | -0.7274 | |
| 208 | Y | A | 0.0000 | |
| 209 | P | A | 0.0000 | |
| 210 | V | A | -1.1735 | |
| 211 | K | A | -1.8476 | |
| 212 | N | A | -2.1025 |