Project name: d39330cddfdca66

Status: done

Started: 2026-01-24 17:08:57
Settings
Chain sequence(s) L: KILLTPRRRQRL
input PDB
Selected Chain(s) L
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with L chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-2.5095
Maximal score value
2.0534
Average score
-0.535
Total score value
-6.4201

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
213 K L -1.4770
214 I L 1.1896
215 L L 2.0534
216 L L 1.8148
217 T L 0.1662
218 P L -0.5987
219 R L -2.2227
220 R L -2.5095
221 R L -2.3966
222 Q L -1.8724
223 R L -1.7864
224 L L 1.2192
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018