Project name: 1f0n_sv2

Status: done

Started: 2025-02-18 00:14:54
Settings
Chain sequence(s) A: SRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDVNEWARYTPAFEWYYQSGLSIVMPVGGQSSFYSDWLKPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGDGPALVDKAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGATPGNSAAAAAVRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:44)
Show buried residues

Minimal score value
-3.1858
Maximal score value
0.9729
Average score
-0.6736
Total score value
-191.3021

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 S A -1.4059
3 R A -2.2653
4 P A -1.4211
5 G A -1.0549
6 L A -0.6378
7 P A -0.1647
8 V A 0.0790
9 E A -0.2407
10 Y A 0.0783
11 L A 0.0000
12 Q A -1.3699
13 V A 0.0000
14 P A -1.2966
15 S A 0.0000
16 P A -0.9420
17 S A -0.6990
18 M A 0.0000
19 G A -1.3437
20 R A -1.8721
21 D A -2.1665
22 I A 0.0000
23 K A -1.5060
24 V A 0.0000
25 Q A -0.2178
26 F A 0.0000
27 Q A 0.0000
28 S A -0.8180
29 G A -1.1471
30 G A -1.5959
31 N A -2.3567
32 N A -2.5039
33 S A 0.0000
34 P A 0.0000
35 A A 0.0000
36 V A 0.0000
37 Y A 0.0000
38 L A 0.0000
39 L A 0.0000
40 D A 0.0000
41 G A 0.0000
42 L A -1.1313
43 R A -2.5374
44 A A 0.0000
45 Q A -2.5117
46 D A -3.1858
47 D A -2.6989
48 V A -1.6463
49 N A 0.0000
50 E A -1.2500
51 W A 0.0000
52 A A 0.0000
53 R A -1.5462
54 Y A -0.3983
55 T A 0.0000
56 P A -0.9352
57 A A 0.0000
58 F A 0.0000
59 E A -1.2111
60 W A -0.6069
61 Y A 0.0000
62 Y A -0.3052
63 Q A -1.1935
64 S A 0.0000
65 G A -1.0326
66 L A 0.0000
67 S A 0.0000
68 I A 0.0000
69 V A 0.0000
70 M A 0.0000
71 P A 0.0000
72 V A 0.0000
73 G A -1.7989
74 G A -1.1150
75 Q A -1.5235
76 S A 0.0000
77 S A 0.0000
78 F A 0.0000
79 Y A 0.0000
80 S A 0.0000
81 D A -0.6468
82 W A 0.0000
83 L A 0.0334
84 K A -1.6137
85 P A -1.0898
86 A A 0.0000
87 C A -0.6968
88 G A -1.2043
89 K A -1.9135
90 A A -0.8649
91 G A -0.5803
92 C A 0.0285
93 Q A -0.7812
94 T A -0.7827
95 Y A 0.0000
96 K A -0.8167
97 W A 0.0000
98 E A 0.0000
99 T A -0.4177
100 F A 0.0000
101 L A 0.0000
102 T A -0.3992
103 S A -0.6520
104 E A -0.8099
105 L A 0.0000
106 P A 0.0000
107 Q A -1.4879
108 W A -0.6070
109 L A 0.0000
110 S A -1.3953
111 A A -0.7890
112 N A -1.0540
113 R A -1.5781
114 A A -1.7521
115 V A 0.0000
116 K A -2.2062
117 P A -1.3567
118 T A -1.0182
119 G A -0.6455
120 S A 0.0000
121 A A 0.0000
122 A A 0.0000
123 I A 0.0000
124 G A 0.0000
125 L A 0.0000
126 S A -0.1106
127 M A -0.0543
128 A A 0.0000
129 G A 0.0000
130 S A 0.0321
131 S A 0.0000
132 A A 0.0000
133 M A 0.0000
134 I A 0.0000
135 L A 0.0000
136 A A 0.0000
137 A A 0.0000
138 Y A -0.1363
139 H A -0.5321
140 P A -0.9773
141 Q A -1.3942
142 Q A -0.9951
143 F A 0.0000
144 I A -0.4081
145 Y A 0.0000
146 A A 0.0000
147 G A 0.0000
148 S A 0.0000
149 L A 0.0000
150 S A 0.0000
151 A A 0.0000
152 L A 0.1455
153 L A 0.0000
154 D A -1.4344
155 P A 0.0000
156 S A -1.8037
157 Q A -2.2923
158 G A -1.9382
159 D A -2.2945
160 G A -1.5642
161 P A 0.0000
162 A A -1.2569
163 L A -0.7367
164 V A 0.0000
165 D A -2.3178
166 K A -2.6132
167 A A -1.9482
168 M A 0.0000
169 G A -2.4462
170 D A -3.0110
171 A A 0.0000
172 G A -1.7764
173 G A -2.0550
174 Y A 0.0000
175 K A -2.2957
176 A A 0.0000
177 A A -0.9350
178 D A -0.9606
179 M A 0.0000
180 W A 0.0000
181 G A 0.0000
182 P A -0.7693
183 S A -1.2666
184 S A -0.8641
185 D A -1.1686
186 P A -1.1499
187 A A -0.8572
188 W A 0.0000
189 E A -2.0916
190 R A -1.4560
191 N A 0.0000
192 D A 0.0000
193 P A 0.0000
194 T A -1.2702
195 Q A -1.6569
196 Q A 0.0000
197 I A 0.0000
198 P A -1.0357
199 K A -1.3884
200 L A 0.0000
201 V A -1.2795
202 A A -0.8995
203 N A -1.4473
204 N A -1.6374
205 T A 0.0000
206 R A -1.2600
207 L A 0.0000
208 W A 0.0000
209 V A 0.0000
210 Y A 0.0000
211 C A 0.0000
212 G A 0.0000
213 N A -0.5634
214 G A 0.0000
215 T A -0.7310
216 P A -1.3349
217 N A -2.1619
218 E A -2.2525
219 L A -1.0132
220 G A -0.9551
221 G A -0.7540
222 A A -0.6890
223 T A -0.4428
224 P A -0.6078
225 G A -0.7556
226 N A -0.6208
227 S A -0.5380
228 A A -0.3236
229 A A -0.3531
230 A A 0.0000
231 A A -0.4403
232 A A -0.1981
233 V A 0.0000
234 R A -0.7149
235 S A -0.7387
236 S A -1.0096
237 N A 0.0000
238 L A -0.6560
239 K A -2.3394
240 F A 0.0000
241 Q A -1.4793
242 D A -2.6868
243 A A -1.8355
244 Y A 0.0000
245 N A -2.4146
246 A A -1.2837
247 A A -0.9288
248 G A -1.1353
249 G A -1.7698
250 H A -1.6968
251 N A -1.3443
252 A A -0.3884
253 V A 0.7241
254 F A 0.9729
255 N A 0.3354
256 F A 0.3577
257 P A -0.1431
258 P A -0.5680
259 N A -0.6989
260 G A 0.0000
261 T A 0.0000
262 H A -0.4727
263 S A 0.0000
264 W A 0.1367
265 E A -0.2760
266 Y A 0.0000
267 W A 0.0000
268 G A 0.0000
269 A A -0.1921
270 Q A 0.0000
271 L A 0.0000
272 N A -0.7405
273 A A -0.7428
274 M A 0.0000
275 K A -1.4649
276 G A -1.7500
277 D A -2.2814
278 L A 0.0000
279 Q A -1.4479
280 S A -1.3134
281 S A -0.9741
282 L A -0.6136
283 G A -0.8738
284 A A -1.0219
285 G A -0.8945
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Laboratory of Theory of Biopolymers 2018