| Chain sequence(s) |
H: EVQLLESGGGLVQPGGSLRLSCAMSGHAFNLYIMAWFRQAPGKEREFVAGVSTSGRTSLYADSVKGRFTISRDNSKTTGYLQMNSLKSEDTAVYYCAARSSASEVWVPSGDEYYAWWGQGTTVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VL105H |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.412095 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:28)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:35)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.3358 | |
| 2 | V | H | 0.0000 | |
| 3 | Q | H | -1.3985 | |
| 4 | L | H | 0.0000 | |
| 5 | L | H | 0.8634 | |
| 6 | E | H | -0.0067 | |
| 7 | S | H | -0.4596 | |
| 8 | G | H | -1.0868 | |
| 9 | G | H | -0.4948 | |
| 10 | G | H | 0.2273 | |
| 11 | L | H | 1.1263 | |
| 12 | V | H | 0.0000 | |
| 13 | Q | H | -1.4700 | |
| 14 | P | H | -1.7329 | |
| 15 | G | H | -1.4690 | |
| 16 | G | H | -0.9755 | |
| 17 | S | H | -1.2822 | |
| 18 | L | H | -0.9504 | |
| 19 | R | H | -2.1666 | |
| 20 | L | H | 0.0000 | |
| 21 | S | H | -0.4756 | |
| 22 | C | H | 0.0000 | |
| 23 | A | H | -0.1009 | |
| 24 | M | H | 0.0000 | |
| 25 | S | H | -0.9995 | |
| 26 | G | H | -1.6895 | |
| 27 | H | H | -1.5284 | |
| 28 | A | H | -0.8508 | |
| 29 | F | H | 0.0000 | |
| 30 | N | H | -1.3717 | |
| 31 | L | H | 0.0560 | |
| 32 | Y | H | 0.1091 | |
| 33 | I | H | 0.0000 | |
| 34 | M | H | 0.0000 | |
| 35 | A | H | 0.0000 | |
| 36 | W | H | 0.0000 | |
| 37 | F | H | 0.0000 | |
| 38 | R | H | -1.5640 | |
| 39 | Q | H | -2.2177 | |
| 40 | A | H | -1.9680 | |
| 41 | P | H | -1.4185 | |
| 42 | G | H | -1.9714 | |
| 43 | K | H | -3.4668 | |
| 44 | E | H | -3.7349 | |
| 45 | R | H | -3.2352 | |
| 46 | E | H | -3.2020 | |
| 47 | F | H | 0.0000 | |
| 48 | V | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | G | H | 0.0000 | |
| 51 | V | H | 0.0000 | |
| 52 | S | H | 0.0000 | |
| 53 | T | H | -0.4931 | |
| 54 | S | H | -0.9398 | |
| 55 | G | H | -1.7034 | |
| 56 | R | H | -1.9304 | |
| 57 | T | H | -0.5900 | |
| 58 | S | H | -0.2651 | |
| 59 | L | H | 0.1543 | |
| 60 | Y | H | -0.7319 | |
| 61 | A | H | -1.5420 | |
| 62 | D | H | -2.4959 | |
| 63 | S | H | -1.8506 | |
| 64 | V | H | 0.0000 | |
| 65 | K | H | -2.6152 | |
| 66 | G | H | -1.8008 | |
| 67 | R | H | -1.5643 | |
| 68 | F | H | 0.0000 | |
| 69 | T | H | -0.8545 | |
| 70 | I | H | 0.0000 | |
| 71 | S | H | -0.8092 | |
| 72 | R | H | -1.4756 | |
| 73 | D | H | -1.9627 | |
| 74 | N | H | -2.3953 | |
| 75 | S | H | -1.9560 | |
| 76 | K | H | -2.3695 | |
| 77 | T | H | -1.9424 | |
| 78 | T | H | 0.0000 | |
| 79 | G | H | 0.0000 | |
| 80 | Y | H | -0.6715 | |
| 81 | L | H | 0.0000 | |
| 82 | Q | H | -1.3410 | |
| 83 | M | H | 0.0000 | |
| 84 | N | H | -1.4007 | |
| 85 | S | H | -1.2629 | |
| 86 | L | H | 0.0000 | |
| 87 | K | H | -2.5106 | |
| 88 | S | H | -2.0266 | |
| 89 | E | H | -2.3208 | |
| 90 | D | H | 0.0000 | |
| 91 | T | H | -0.7842 | |
| 92 | A | H | 0.0000 | |
| 93 | V | H | -0.0378 | |
| 94 | Y | H | 0.0000 | |
| 95 | Y | H | -0.2879 | |
| 96 | C | H | 0.0000 | |
| 97 | A | H | 0.0000 | |
| 98 | A | H | 0.0000 | |
| 99 | R | H | -0.0388 | |
| 100 | S | H | -0.0087 | |
| 101 | S | H | 0.2600 | |
| 102 | A | H | 0.1502 | |
| 103 | S | H | -0.0388 | |
| 104 | E | H | 0.3556 | |
| 105 | L | H | 1.4834 | mutated: VL105H |
| 106 | W | H | 1.5278 | |
| 107 | V | H | 0.0000 | |
| 108 | P | H | 0.0000 | |
| 109 | S | H | -0.5818 | |
| 110 | G | H | -1.3070 | |
| 111 | D | H | -2.0047 | |
| 112 | E | H | -1.9226 | |
| 113 | Y | H | -0.4264 | |
| 114 | Y | H | 0.0000 | |
| 115 | A | H | -0.0592 | |
| 116 | W | H | 0.1168 | |
| 117 | W | H | 0.0206 | |
| 118 | G | H | -0.2784 | |
| 119 | Q | H | -0.9712 | |
| 120 | G | H | -0.4206 | |
| 121 | T | H | -0.2714 | |
| 122 | T | H | 0.0684 | |
| 123 | V | H | 0.0000 | |
| 124 | T | H | -0.1051 | |
| 125 | V | H | 0.0000 | |
| 126 | S | H | -0.5710 | |
| 127 | S | H | -0.9366 |