| Chain sequence(s) |
A: GGGHKGG
C: GGGHKGG B: GGGHKGG D: GGGHKGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:36)
[INFO] Main: Simulation completed successfully. (00:00:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.9995 | |
| 2 | G | A | -1.8978 | |
| 3 | G | A | -2.7459 | |
| 4 | H | A | -2.5719 | |
| 5 | K | A | -3.1159 | |
| 6 | G | A | -1.8444 | |
| 7 | G | A | -1.1156 | |
| 1 | G | B | -1.7791 | |
| 2 | G | B | -2.2832 | |
| 3 | G | B | -2.8116 | |
| 4 | H | B | -3.0658 | |
| 5 | K | B | -2.9176 | |
| 6 | G | B | -2.0772 | |
| 7 | G | B | -1.1946 | |
| 1 | G | C | -2.0984 | |
| 2 | G | C | -2.2900 | |
| 3 | G | C | -2.7098 | |
| 4 | H | C | -3.7472 | |
| 5 | K | C | -3.8489 | |
| 6 | G | C | -3.1217 | |
| 7 | G | C | -1.9257 | |
| 1 | G | D | -1.3676 | |
| 2 | G | D | -2.0946 | |
| 3 | G | D | -2.5551 | |
| 4 | H | D | -3.5805 | |
| 5 | K | D | -3.7894 | |
| 6 | G | D | -2.6090 | |
| 7 | G | D | -1.2923 |