| Chain sequence(s) |
A: NFDATDDEDDLPDNFDATDDEDDLPD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:08)
[INFO] Main: Simulation completed successfully. (00:00:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | N | A | -0.8120 | |
| 2 | F | A | 0.4598 | |
| 3 | D | A | -1.3420 | |
| 4 | A | A | -1.1444 | |
| 5 | T | A | -1.7001 | |
| 6 | D | A | -3.5967 | |
| 7 | D | A | -4.4926 | |
| 8 | E | A | -4.4604 | |
| 9 | D | A | -4.0808 | |
| 10 | D | A | -3.2956 | |
| 11 | L | A | -1.0337 | |
| 12 | P | A | -1.1247 | |
| 13 | D | A | -1.8685 | |
| 14 | N | A | -1.5421 | |
| 15 | F | A | -0.3990 | |
| 16 | D | A | -2.8132 | |
| 17 | A | A | -1.2828 | |
| 18 | T | A | -2.2425 | |
| 19 | D | A | -3.9317 | |
| 20 | D | A | -4.8088 | |
| 21 | E | A | -4.6426 | |
| 22 | D | A | -4.4816 | |
| 23 | D | A | -4.7254 | |
| 24 | L | A | -3.9922 | |
| 25 | P | A | -2.5362 | |
| 26 | D | A | -2.8368 |