Project name: query_structure

Status: done

Started: 2026-03-17 00:16:30
Settings
Chain sequence(s) A: NFDATDDEDDLPDNFDATDDEDDLPD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-4.8088
Maximal score value
0.4598
Average score
-2.6433
Total score value
-68.7266

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.8120
2 F A 0.4598
3 D A -1.3420
4 A A -1.1444
5 T A -1.7001
6 D A -3.5967
7 D A -4.4926
8 E A -4.4604
9 D A -4.0808
10 D A -3.2956
11 L A -1.0337
12 P A -1.1247
13 D A -1.8685
14 N A -1.5421
15 F A -0.3990
16 D A -2.8132
17 A A -1.2828
18 T A -2.2425
19 D A -3.9317
20 D A -4.8088
21 E A -4.6426
22 D A -4.4816
23 D A -4.7254
24 L A -3.9922
25 P A -2.5362
26 D A -2.8368
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Laboratory of Theory of Biopolymers 2018