Project name: A?42

Status: done

Started: 2026-06-19 11:42:07
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:50)
Show buried residues

Minimal score value
-2.9199
Maximal score value
2.8389
Average score
-0.5551
Total score value
-46.6282

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.2508
2 A A -1.7130
3 E A -2.5900
4 F A -1.6730
5 R A -2.9199
6 H A -2.6902
7 D A -2.8431
8 S A -1.7761
9 G A 0.0000
10 Y A -0.6784
11 E A -0.8117
12 V A -0.3693
13 H A -0.9640
14 H A -1.5647
15 Q A -2.0451
16 K A -1.3299
17 L A 0.0000
18 V A 0.2231
19 F A 0.0000
20 F A -1.2185
21 A A -1.5406
22 E A -2.4851
23 D A -2.0816
24 V A 0.0000
25 G A -1.1379
26 S A -1.3775
27 N A -1.3816
28 K A -0.7309
29 G A -0.4752
30 A A -0.3177
31 I A 0.0000
32 I A 0.8384
33 G A 0.4587
34 L A 1.0376
35 M A 0.0000
36 V A 1.7212
37 G A 0.8980
38 G A 1.4477
39 V A 1.9079
40 V A 2.5964
41 I A 1.7186
42 A A 1.3689
1 D B -2.2014
2 A B -1.6230
3 E B -2.3596
4 F B -1.1918
5 R B -2.6029
6 H B -2.4431
7 D B -2.7369
8 S B -1.7066
9 G B 0.0000
10 Y B -0.8129
11 E B -0.6432
12 V B -0.2948
13 H B -1.0259
14 H B -1.6397
15 Q B -2.2494
16 K B -1.5386
17 L B 0.0000
18 V B 0.0000
19 F B 0.0000
20 F B -1.0762
21 A B -1.6067
22 E B -2.4096
23 D B -2.1516
24 V B 0.0000
25 G B -1.0110
26 S B -1.3725
27 N B -1.3087
28 K B -0.7146
29 G B -0.5783
30 A B -0.2363
31 I B 0.0000
32 I B 0.9077
33 G B 0.6893
34 L B 1.4505
35 M B 0.0000
36 V B 2.1409
37 G B 1.0836
38 G B 1.5957
39 V B 2.8389
40 V B 2.7857
41 I B 1.2130
42 A B 0.9511
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Laboratory of Theory of Biopolymers 2018