| Chain sequence(s) |
A: GSGHKFF
C: GSGHKFF B: GSGHKFF E: GSGHKFF D: GSGHKFF G: GSGHKFF F: GSGHKFF I: GSGHKFF H: GSGHKFF K: GSGHKFF J: GSGHKFF M: GSGHKFF L: GSGHKFF O: GSGHKFF N: GSGHKFF Q: GSGHKFF P: GSGHKFF S: GSGHKFF R: GSGHKFF T: GSGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:30)
[INFO] Main: Simulation completed successfully. (00:05:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0675 | |
| 2 | S | A | -0.8193 | |
| 3 | G | A | -0.9661 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.1288 | |
| 6 | F | A | 1.6104 | |
| 7 | F | A | 3.4911 | |
| 1 | G | B | -1.0747 | |
| 2 | S | B | -0.8811 | |
| 3 | G | B | -1.0275 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -0.4509 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 3.3245 | |
| 1 | G | C | -1.0880 | |
| 2 | S | C | -0.9238 | |
| 3 | G | C | -1.3384 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -0.7868 | |
| 6 | F | C | 0.0000 | |
| 7 | F | C | 2.6254 | |
| 1 | G | D | -1.0699 | |
| 2 | S | D | -0.8260 | |
| 3 | G | D | -0.9566 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -0.1542 | |
| 6 | F | D | 0.0000 | |
| 7 | F | D | 3.4147 | |
| 1 | G | E | -1.0803 | |
| 2 | S | E | -0.8399 | |
| 3 | G | E | -0.9453 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -0.1831 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | 3.1855 | |
| 1 | G | F | -1.0788 | |
| 2 | S | F | -0.8474 | |
| 3 | G | F | -0.9515 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -0.1224 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 3.1911 | |
| 1 | G | G | -1.0939 | |
| 2 | S | G | -0.8482 | |
| 3 | G | G | -0.9714 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -0.3125 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 3.1939 | |
| 1 | G | H | -1.0964 | |
| 2 | S | H | -1.0110 | |
| 3 | G | H | -1.3827 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | -0.3312 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 3.2126 | |
| 1 | G | I | -0.9037 | |
| 2 | S | I | -1.0226 | |
| 3 | G | I | -1.4527 | |
| 4 | H | I | -1.4044 | |
| 5 | K | I | -0.8550 | |
| 6 | F | I | 1.7876 | |
| 7 | F | I | 3.0530 | |
| 1 | G | J | -0.8887 | |
| 2 | S | J | -0.9579 | |
| 3 | G | J | -1.2812 | |
| 4 | H | J | -1.3499 | |
| 5 | K | J | -0.9006 | |
| 6 | F | J | 1.0471 | |
| 7 | F | J | 2.6465 | |
| 1 | G | K | -1.0769 | |
| 2 | S | K | -0.9676 | |
| 3 | G | K | -1.2844 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -0.5469 | |
| 6 | F | K | 0.0000 | |
| 7 | F | K | 2.9549 | |
| 1 | G | L | -1.0339 | |
| 2 | S | L | -0.8544 | |
| 3 | G | L | -1.0178 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -0.3968 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 3.3185 | |
| 1 | G | M | -1.0132 | |
| 2 | S | M | -0.8257 | |
| 3 | G | M | -1.0127 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -0.3247 | |
| 6 | F | M | 0.0000 | |
| 7 | F | M | 3.3549 | |
| 1 | G | N | -0.9607 | |
| 2 | S | N | -0.7734 | |
| 3 | G | N | -1.0012 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -0.3567 | |
| 6 | F | N | 0.0000 | |
| 7 | F | N | 3.1026 | |
| 1 | G | O | -0.4802 | |
| 2 | S | O | -0.0463 | |
| 3 | G | O | -0.1166 | |
| 4 | H | O | 0.0000 | |
| 5 | K | O | -0.3043 | |
| 6 | F | O | 0.0000 | |
| 7 | F | O | 2.3874 | |
| 1 | G | P | 0.1688 | |
| 2 | S | P | 0.9427 | |
| 3 | G | P | 0.9217 | |
| 4 | H | P | 0.0794 | |
| 5 | K | P | -0.2291 | |
| 6 | F | P | 0.0000 | |
| 7 | F | P | 1.3341 | |
| 1 | G | Q | -0.3609 | |
| 2 | S | Q | -0.0936 | |
| 3 | G | Q | -0.1325 | |
| 4 | H | Q | -0.5306 | |
| 5 | K | Q | -0.5712 | |
| 6 | F | Q | 0.0000 | |
| 7 | F | Q | 2.4825 | |
| 1 | G | R | -0.9289 | |
| 2 | S | R | -0.8285 | |
| 3 | G | R | -1.4073 | |
| 4 | H | R | -1.4066 | |
| 5 | K | R | -1.4215 | |
| 6 | F | R | 0.5630 | |
| 7 | F | R | 2.3209 | |
| 1 | G | S | -1.0243 | |
| 2 | S | S | -0.9513 | |
| 3 | G | S | -1.1590 | |
| 4 | H | S | 0.0000 | |
| 5 | K | S | -0.7926 | |
| 6 | F | S | 0.0000 | |
| 7 | F | S | 2.9006 | |
| 1 | G | T | -0.9542 | |
| 2 | S | T | -0.9210 | |
| 3 | G | T | -1.5059 | |
| 4 | H | T | -1.6171 | |
| 5 | K | T | -1.3830 | |
| 6 | F | T | 0.7604 | |
| 7 | F | T | 2.5514 |