| Chain sequence(s) |
H: EVQLQQSGAELARPGASVKMSCKASGYTFTSYTIQWVKQRPGQGLEWIGYINPSSGYTNYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARRAVAFDYWGQGTTLTVSS
L: DIQMIQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:06)
[INFO] Main: Simulation completed successfully. (00:02:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0942 | |
| 2 | V | H | -1.2785 | |
| 3 | Q | H | -2.0912 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1626 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0234 | |
| 8 | G | H | -0.9434 | |
| 9 | A | H | -0.1873 | |
| 11 | E | H | -0.2370 | |
| 12 | L | H | 0.7625 | |
| 13 | A | H | -0.4987 | |
| 14 | R | H | -1.8782 | |
| 15 | P | H | -1.4332 | |
| 16 | G | H | -1.1582 | |
| 17 | A | H | -0.9449 | |
| 18 | S | H | -0.9566 | |
| 19 | V | H | -0.7282 | |
| 20 | K | H | -1.2634 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.6818 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5211 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3941 | |
| 27 | G | H | -1.2679 | |
| 28 | Y | H | -0.5318 | |
| 29 | T | H | -0.2445 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.5788 | |
| 36 | S | H | -0.1641 | |
| 37 | Y | H | 0.2409 | |
| 38 | T | H | -0.1017 | |
| 39 | I | H | 0.0000 | |
| 40 | Q | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.7280 | |
| 45 | R | H | -1.2704 | |
| 46 | P | H | -0.9489 | |
| 47 | G | H | -1.2079 | |
| 48 | Q | H | -1.6550 | |
| 49 | G | H | -1.1652 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9397 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.1231 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.5421 | |
| 62 | S | H | -0.2532 | |
| 63 | G | H | -0.2279 | |
| 64 | Y | H | 0.8896 | |
| 65 | T | H | 0.3854 | |
| 66 | N | H | -0.0951 | |
| 67 | Y | H | -0.9703 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.9590 | |
| 70 | K | H | -3.0748 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.4641 | |
| 74 | D | H | -3.1957 | |
| 75 | K | H | -2.2198 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.9858 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.1819 | |
| 80 | A | H | -0.7139 | |
| 81 | D | H | -1.4504 | |
| 82 | K | H | -2.0091 | |
| 83 | S | H | -1.1622 | |
| 84 | S | H | -0.9653 | |
| 85 | S | H | -1.1162 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3047 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9768 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0175 | |
| 93 | S | H | -0.9981 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2442 | |
| 96 | S | H | -1.3247 | |
| 97 | E | H | -1.8782 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6235 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0862 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.0873 | |
| 108 | A | H | 0.6890 | |
| 109 | V | H | 1.8485 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.0947 | |
| 117 | Y | H | -0.1619 | |
| 118 | W | H | -0.5049 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7920 | |
| 121 | G | H | -0.7854 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1112 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1776 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7169 | |
| 128 | S | H | -0.8825 | |
| 1 | D | L | -2.2007 | |
| 2 | I | L | -1.6625 | |
| 3 | Q | L | -1.8855 | |
| 4 | M | L | 0.0000 | |
| 5 | I | L | -0.1336 | |
| 6 | Q | L | -0.5118 | |
| 7 | S | L | -0.5584 | |
| 8 | P | L | -0.4145 | |
| 9 | S | L | -0.6442 | |
| 10 | S | L | -0.9239 | |
| 11 | L | L | -0.4472 | |
| 12 | S | L | -0.6196 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.4361 | |
| 15 | L | L | 0.0185 | |
| 16 | G | L | -1.0052 | |
| 17 | E | L | -1.6347 | |
| 18 | R | L | -2.2343 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6523 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.6899 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.4259 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.9412 | |
| 27 | Q | L | -2.8305 | |
| 28 | E | L | -2.6460 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.6851 | |
| 37 | G | L | -0.0243 | |
| 38 | Y | L | 1.2356 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6127 | |
| 46 | P | L | -1.3896 | |
| 47 | D | L | -2.2712 | |
| 48 | G | L | -1.5423 | |
| 49 | T | L | -1.3467 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.9365 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.8125 | |
| 56 | A | L | 0.7852 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2143 | |
| 66 | T | L | 0.0402 | |
| 67 | L | L | -0.1469 | |
| 68 | D | L | -0.4091 | |
| 69 | S | L | -0.4759 | |
| 70 | G | L | -0.8204 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.2276 | |
| 74 | K | L | -1.8852 | |
| 75 | R | L | -1.5168 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6024 | |
| 78 | G | L | -0.4141 | |
| 79 | S | L | -0.9060 | |
| 80 | R | L | -1.6662 | |
| 83 | S | L | -1.2901 | |
| 84 | G | L | -1.4207 | |
| 85 | S | L | -1.9798 | |
| 86 | D | L | -1.7334 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.8515 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6344 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5376 | |
| 93 | S | L | -1.5322 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.7159 | |
| 96 | S | L | -1.0932 | |
| 97 | E | L | -2.0689 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.7033 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.0062 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | A | L | 0.0665 | |
| 109 | S | L | -0.2336 | |
| 114 | Y | L | 0.1274 | |
| 115 | P | L | -0.6816 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.6318 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7290 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.5667 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.9014 | |
| 126 | I | L | 0.8224 | |
| 127 | K | L | -0.8791 |