Project name: GSKGHFF2

Status: done

Started: 2026-02-20 08:54:07
Settings
Chain sequence(s) A: GSKGHFF
B: GSKGHFF
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:31)
Show buried residues

Minimal score value
-3.6841
Maximal score value
3.3489
Average score
-0.7938
Total score value
-11.1127

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.0500
2 S A -2.7872
3 K A -3.6620
4 G A -1.8245
5 H A -0.4171
6 F A 2.3853
7 F A 3.3489
1 G B -2.1779
2 S B -2.7958
3 K B -3.6841
4 G B -1.9541
5 H B -0.4665
6 F B 2.2149
7 F B 2.7574
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Laboratory of Theory of Biopolymers 2018