Project name: query_structure

Status: done

Started: 2026-03-17 00:07:44
Settings
Chain sequence(s) A: MGEVQLVESGGGSVQAGGSLRLSCAASGVSNTDMIMIWFRQAPGKEREGVLAAIYKNSTYYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAIYYCAAISAVIGRHIRPHIYWGQGTQVTVGGGS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-3.4539
Maximal score value
2.3754
Average score
-0.6841
Total score value
-86.1966

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4758
2 G A -0.9921
3 E A -1.9636
4 V A -0.8633
5 Q A -0.9192
6 L A 0.0000
7 V A 1.3009
8 E A 0.0000
9 S A -0.5766
10 G A -1.2450
11 G A -1.1802
12 G A -0.9455
13 S A -0.7429
14 V A -0.8739
15 Q A -1.8575
16 A A -1.9239
17 G A -1.4250
18 G A -1.0553
19 S A -1.1805
20 L A -1.1272
21 R A -2.1759
22 L A 0.0000
23 S A -0.4101
24 C A 0.0000
25 A A -0.0350
26 A A 0.0000
27 S A -0.6262
28 G A -0.7772
29 V A -0.1092
30 S A -0.7155
31 N A 0.0000
32 T A -1.4002
33 D A -0.9364
34 M A 0.0000
35 I A 0.4007
36 M A 0.0000
37 I A 0.0000
38 W A 0.0000
39 F A 0.1669
40 R A 0.0000
41 Q A -1.7273
42 A A -1.8370
43 P A -1.5951
44 G A -1.9713
45 K A -3.2571
46 E A -3.4539
47 R A -2.5967
48 E A -1.6347
49 G A -0.7301
50 V A 0.5153
51 L A 0.0000
52 A A 0.0000
53 A A 0.8251
54 I A 0.0000
55 Y A -0.5397
56 K A -2.1579
57 N A -2.0425
58 S A -0.8410
59 T A 0.1111
60 Y A 0.9758
61 Y A -0.1713
62 A A -0.9961
63 D A -2.3476
64 S A -1.8299
65 V A 0.0000
66 K A -2.4830
67 G A -1.7974
68 R A -1.5099
69 F A 0.0000
70 T A -0.7517
71 I A 0.0000
72 S A -0.7169
73 Q A -1.5914
74 D A -2.0522
75 N A -2.3477
76 A A -1.7424
77 K A -2.4856
78 N A -1.7907
79 T A 0.0000
80 V A 0.0000
81 Y A 0.0000
82 L A 0.0000
83 Q A -1.2812
84 M A 0.0000
85 N A -1.3911
86 S A -1.1836
87 L A 0.0000
88 K A -2.4361
89 P A -2.0627
90 E A -2.4102
91 D A 0.0000
92 T A -1.1172
93 A A 0.0000
94 I A -0.4391
95 Y A 0.0000
96 Y A 0.0000
97 C A 0.0000
98 A A 0.0000
99 A A 0.0000
100 I A 0.7739
101 S A 0.6283
102 A A 1.1292
103 V A 2.3754
104 I A 2.0605
105 G A 0.2675
106 R A -1.4859
107 H A -1.0031
108 I A 0.6412
109 R A -1.2578
110 P A -0.2319
111 H A -0.6752
112 I A 0.4197
113 Y A 0.4667
114 W A 0.8391
115 G A 0.1816
116 Q A -0.7409
117 G A -0.4236
118 T A 0.0000
119 Q A -1.2733
120 V A 0.0000
121 T A -1.0366
122 V A 0.0000
123 G A -1.5114
124 G A -1.6213
125 G A -1.3926
126 S A -0.7210
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018