Project name: 4_1

Status: done

Started: 2025-02-27 09:32:08
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Chain sequence(s) A: MGSHHHHHHMKKDDQIAAAIALRGMAKDGKFAVKGGGGSGGGGQNKNDQIAAAIVLRGLAKGGKFANAGGGGSGGGGKKKNDQIAAALVLRGVAKSGKFAGAGGGGSGGGGITRNDEIAAAIVLRGMAKGGRFFASGGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:28)
Show buried residues

Minimal score value
-3.7556
Maximal score value
1.4047
Average score
-1.2466
Total score value
-173.279

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2057
2 G A -0.5890
3 S A -1.2945
4 H A -2.1938
5 H A -2.7049
6 H A -2.7274
7 H A -2.8155
8 H A -3.6023
9 H A -3.5616
10 M A -3.0970
11 K A -3.7556
12 K A -3.6558
13 D A -2.8420
14 D A -2.3305
15 Q A -1.8863
16 I A -0.8164
17 A A -1.0024
18 A A 0.0000
19 A A 0.0000
20 I A -0.1577
21 A A -0.5826
22 L A 0.0000
23 R A -1.7470
24 G A -1.7855
25 M A -2.1656
26 A A -2.1603
27 K A -3.1560
28 D A -3.1655
29 G A -2.2876
30 K A -2.4794
31 F A -1.8896
32 A A 0.0000
33 V A 0.0000
34 K A -1.8103
35 G A -2.3486
36 G A -1.9247
37 G A -1.6174
38 G A -1.2363
39 S A -1.3768
40 G A -1.0529
41 G A -1.2567
42 G A -1.6129
43 G A -2.3027
44 Q A -3.0222
45 N A -3.5573
46 K A -3.5594
47 N A -3.0649
48 D A -2.6203
49 Q A -1.9663
50 I A -0.6945
51 A A -0.5701
52 A A 0.0000
53 A A 0.0000
54 I A 0.3739
55 V A -0.0047
56 L A 0.0000
57 R A -2.1289
58 G A -1.5359
59 L A 0.0000
60 A A -1.9931
61 K A -2.6559
62 G A -1.8789
63 G A -1.7349
64 K A -1.5924
65 F A -0.0390
66 A A -0.2530
67 N A -0.9738
68 A A -1.0636
69 G A -1.3730
70 G A -1.7645
71 G A -1.6938
72 G A -1.2393
73 S A -0.9667
74 G A -1.2121
75 G A -1.1346
76 G A -1.5569
77 G A -1.9421
78 K A -2.8861
79 K A -2.6051
80 K A -2.3882
81 N A -2.1706
82 D A -1.8994
83 Q A 0.0000
84 I A -0.1672
85 A A -0.1956
86 A A 0.0000
87 A A 0.0899
88 L A 0.0000
89 V A 1.0815
90 L A 0.5562
91 R A -0.6655
92 G A 0.2498
93 V A 1.1423
94 A A -0.3019
95 K A -1.6088
96 S A -1.4555
97 G A -1.7265
98 K A -2.2194
99 F A -0.8727
100 A A -0.4990
101 G A 0.0000
102 A A -0.4495
103 G A -0.4351
104 G A -0.6153
105 G A -1.1123
106 G A -1.0483
107 S A -0.8653
108 G A -0.9867
109 G A -1.2669
110 G A -1.3066
111 G A -0.8807
112 I A -0.3953
113 T A -1.3922
114 R A -2.6576
115 N A 0.0000
116 D A -2.4837
117 E A -2.5665
118 I A -1.0674
119 A A 0.0000
120 A A -0.4926
121 A A -0.0629
122 I A -0.0875
123 V A 0.0000
124 L A 0.9491
125 R A -1.1236
126 G A -0.8387
127 M A -0.0228
128 A A -0.6378
129 K A -2.1090
130 G A -1.7192
131 G A -1.5763
132 R A -1.6861
133 F A 0.3827
134 F A 1.4047
135 A A 0.5169
136 S A -0.4025
137 G A -0.9813
138 G A -1.3442
139 G A -1.1731
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Laboratory of Theory of Biopolymers 2018