Project name: ImmunogenK

Status: done

Started: 2026-03-12 08:26:43
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Chain sequence(s) A: HHHHHHQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRGRIYLKAEVADEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNVPIPEGDEEGNMELRQKFEKAKLG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:56)
Show buried residues

Minimal score value
-4.1583
Maximal score value
2.4776
Average score
-1.0481
Total score value
-303.9495

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 H A -1.8844
2 H A -2.4001
3 H A -2.6881
4 H A -2.8936
5 H A -3.0155
6 H A -3.1620
7 Q A -3.1572
8 K A -3.0448
9 N A -2.5890
10 V A -1.7100
11 H A -2.2382
12 E A -3.1326
13 V A -2.3656
14 K A -2.5284
15 D A -3.0662
16 H A 0.0000
17 K A -2.0835
18 F A 0.0000
19 I A -1.4792
20 A A -1.1529
21 R A -0.7613
22 F A 0.1884
23 F A 0.0000
24 K A -1.6156
25 Q A -0.9554
26 P A -0.0993
27 T A 0.0000
28 F A 0.5145
29 C A 0.0000
30 S A 0.0000
31 H A 0.0000
32 C A -1.1683
33 T A -1.1259
34 D A -1.2629
35 F A 0.5797
36 I A 0.0000
37 W A 1.3456
38 G A 1.2587
39 F A 1.7509
40 G A 0.2274
41 K A -0.6638
42 Q A -0.0619
43 G A 0.0000
44 F A 0.0000
45 Q A -0.3208
46 C A 0.0000
47 Q A -0.5211
48 V A 0.0824
49 C A 0.0000
50 C A 0.1821
51 F A 0.0000
52 V A 0.0000
53 V A 0.0000
54 H A -0.9885
55 K A -1.9208
56 R A -1.7373
57 C A 0.0000
58 H A -1.9809
59 E A -2.5730
60 F A 0.0000
61 V A 0.0000
62 T A -0.8387
63 F A 0.0000
64 S A -1.3231
65 C A 0.0000
66 P A 0.0000
67 G A -1.0414
68 A A -2.1170
69 D A -3.0934
70 K A -3.5038
71 G A -2.6312
72 P A -2.5119
73 D A -3.0716
74 T A -2.6418
75 D A -3.5848
76 D A -2.8378
77 P A -2.3741
78 R A -3.0074
79 S A -2.2285
80 K A -2.7432
81 H A -2.4487
82 K A -3.2663
83 F A -1.9865
84 K A -1.7756
85 I A 0.7952
86 H A 0.1015
87 T A 0.4827
88 Y A 0.1770
89 G A -0.1379
90 S A -0.4885
91 P A -0.1645
92 T A 0.0327
93 F A 0.3631
94 C A 0.0000
95 D A -0.9761
96 H A 0.0000
97 C A 0.0530
98 G A 0.0000
99 S A 0.0825
100 L A 0.5190
101 L A 0.0000
102 Y A 1.6146
103 G A 1.3198
104 L A 2.3111
105 I A 2.4776
106 H A 0.6484
107 Q A 0.7899
108 G A 0.0000
109 M A -1.0641
110 K A -1.7375
111 C A 0.0000
112 D A -3.1747
113 T A -1.9663
114 C A -1.7041
115 D A -2.6478
116 M A 0.0000
117 N A -1.1537
118 V A 0.0000
119 H A -0.4890
120 K A -1.2555
121 Q A -1.1853
122 C A 0.0000
123 V A 0.6628
124 I A 1.6133
125 N A 0.8123
126 V A 0.0000
127 P A 0.0000
128 S A -0.9493
129 L A -0.5998
130 C A -1.5622
131 G A -1.1525
132 M A -0.4755
133 D A -1.6239
134 H A -1.0295
135 T A -1.1711
136 E A 0.0000
137 K A -2.2187
138 R A -1.2443
139 G A 0.0000
140 R A -0.6340
141 I A 0.0000
142 Y A -0.5558
143 L A 0.0000
144 K A -1.2421
145 A A 0.0000
146 E A -1.3862
147 V A -1.6991
148 A A -1.7329
149 D A -3.1025
150 E A -3.8303
151 K A -3.3298
152 L A 0.0000
153 H A -1.5077
154 V A 0.0000
155 T A -1.0314
156 V A 0.0000
157 R A -1.6522
158 D A 0.0000
159 A A 0.0000
160 K A -0.8685
161 N A 0.0000
162 L A 0.0000
163 I A -0.0583
164 P A -0.1176
165 M A -0.5718
166 D A -1.4307
167 P A -1.2359
168 N A -1.6594
169 G A -0.8895
170 L A -0.5876
171 S A 0.0000
172 D A -1.3867
173 P A 0.0000
174 Y A 0.0000
175 V A 0.0000
176 K A -1.5175
177 L A 0.0000
178 K A -1.5994
179 L A 0.0000
180 I A -0.9184
181 P A -1.0828
182 D A 0.0000
183 P A -1.7814
184 K A -3.1656
185 N A -3.3767
186 E A -3.4315
187 S A -2.4460
188 K A -2.8167
189 Q A -2.0281
190 K A -2.6515
191 T A 0.0000
192 K A -2.4982
193 T A -1.3933
194 I A -1.1111
195 R A -1.7849
196 S A -1.2703
197 T A -0.6932
198 L A -0.3612
199 N A -0.8815
200 P A 0.0000
201 Q A -1.9995
202 W A 0.0000
203 N A -2.1967
204 E A -1.6723
205 S A -0.9452
206 F A -0.4544
207 T A -0.8458
208 F A 0.0000
209 K A -3.1383
210 L A 0.0000
211 K A -2.9651
212 P A -1.9828
213 S A -1.7592
214 D A 0.0000
215 K A -2.8319
216 D A -2.8412
217 R A -1.6941
218 R A -1.1959
219 L A 0.0000
220 S A 0.0000
221 V A 0.0000
222 E A 0.0000
223 I A 0.0000
224 W A 0.0000
225 D A 0.0000
226 W A -1.3472
227 D A -2.2914
228 R A -2.4528
229 T A -1.5458
230 T A -1.9228
231 R A -2.7822
232 N A -2.2369
233 D A -2.1303
234 F A -0.8757
235 M A 0.0000
236 G A 0.0000
237 S A 0.0000
238 L A 0.0000
239 S A 0.0000
240 F A 0.0000
241 G A -1.2990
242 V A 0.0000
243 S A -2.0193
244 E A -2.5527
245 L A 0.0000
246 M A -1.3474
247 K A -1.7849
248 M A -0.4118
249 P A -0.7820
250 A A 0.0000
251 S A -0.5383
252 G A 0.0000
253 W A -0.4245
254 Y A 0.0000
255 K A -0.4322
256 L A 0.0000
257 L A 0.0000
258 N A -2.0701
259 Q A -2.2679
260 E A -2.7309
261 E A -1.7911
262 G A 0.0000
263 E A -1.5076
264 Y A 0.2677
265 Y A 0.5676
266 N A 0.2836
267 V A 0.5421
268 P A -0.0845
269 I A 0.0000
270 P A -1.6841
271 E A -3.2032
272 G A -3.2035
273 D A -4.1583
274 E A -4.0126
275 E A -3.7613
276 G A -3.0752
277 N A -2.5875
278 M A -1.5675
279 E A -2.5855
280 L A -1.9400
281 R A -2.2998
282 Q A -2.9609
283 K A -3.2212
284 F A -1.7039
285 E A -2.4547
286 K A -2.7948
287 A A -1.7059
288 K A -1.8387
289 L A -0.1006
290 G A -0.7198
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Laboratory of Theory of Biopolymers 2018