Project name: wtVHL1

Status: done

Started: 2026-03-23 07:45:01
Settings
Chain sequence(s) A: QVQLQQSGPELVKPGASVRMSCKTSGYTFTDYVISWVKQRPGQGLEWIGEIFPRTGSTYYNENFKATATLTADKSSNTAYMQLSSLTSEDSAAYFCAFITSVDWAMEYWGQGTSVTVSS
C: RLLEMEFEERKRAAE
input PDB
Selected Chain(s) A,C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-3.4676
Maximal score value
0.9571
Average score
-0.8181
Total score value
-109.6206

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2832
2 V A -0.7410
3 Q A -1.0062
4 L A 0.0000
5 Q A -1.6998
6 Q A -1.2693
7 S A -1.1992
8 G A -0.8390
9 P A -0.6001
10 E A -0.5313
11 L A 0.6979
12 V A -0.4535
13 K A -1.8162
14 P A -1.7484
15 G A -1.0231
16 A A -0.7509
17 S A -1.0312
18 V A 0.0000
19 R A -2.0622
20 M A 0.0000
21 S A -0.7284
22 C A 0.0000
23 K A -1.5597
24 T A 0.0000
25 S A -1.0843
26 G A -0.8464
27 Y A -0.4526
28 T A -0.5326
29 F A 0.0000
30 T A -1.2366
31 D A -0.8126
32 Y A -0.1051
33 V A 0.0000
34 I A 0.0000
35 S A 0.0000
36 W A 0.0000
37 V A 0.0000
38 K A -0.2850
39 Q A -0.8873
40 R A -1.6608
41 P A -1.3921
42 G A -1.3995
43 Q A -1.8010
44 G A -0.8746
45 L A 0.1744
46 E A -0.1717
47 W A 0.0206
48 I A 0.0000
49 G A 0.0000
50 E A 0.0000
51 I A 0.0000
52 F A 0.0000
53 P A 0.0000
54 R A -1.4088
55 T A -0.7765
56 G A -0.8356
57 S A -0.5896
58 T A -0.1810
59 Y A -0.6959
60 Y A -1.0901
61 N A -1.5291
62 E A -2.9970
63 N A -2.4132
64 F A -1.6000
65 K A -2.5087
66 A A -1.1580
67 T A -0.7055
68 A A 0.0000
69 T A -0.5236
70 L A 0.0000
71 T A -0.3879
72 A A -1.0628
73 D A -1.8004
74 K A -2.4895
75 S A -1.5075
76 S A -1.3821
77 N A -1.7695
78 T A 0.0000
79 A A 0.0000
80 Y A -0.2842
81 M A 0.0000
82 Q A -1.1209
83 L A 0.0000
84 S A -0.5803
85 S A -0.5815
86 L A -0.8762
87 T A -1.2254
88 S A -1.9082
89 E A -3.1705
90 D A -2.8635
91 S A -1.4371
92 A A -0.8980
93 A A -0.5231
94 Y A 0.0000
95 F A 0.0384
96 C A 0.0000
97 A A 0.0000
98 F A 0.0000
99 I A 0.0000
100 T A -0.1909
101 S A 0.0006
102 V A 0.7743
103 D A -0.9505
104 W A -0.4124
105 A A -0.3728
106 M A -0.1122
107 E A -1.1895
108 Y A -0.2078
109 W A -0.0662
110 G A -0.7442
111 Q A -1.3001
112 G A -0.8803
113 T A 0.0000
114 S A -0.5424
115 V A 0.0000
116 T A -0.9057
117 V A 0.0000
118 S A -1.4976
119 S A -1.0431
1 R C -1.0148
2 L C 0.9571
3 L C 0.2933
4 E C -0.2301
5 M C -0.4725
6 E C -1.3103
7 F C 0.0000
8 E C -2.2131
9 E C -3.4676
10 R C -2.5916
11 K C -2.6101
12 R C -3.3288
13 A C -1.6807
14 A C -1.9897
15 E C -2.4861
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Laboratory of Theory of Biopolymers 2018