Project name: d571b9ede7862a7

Status: done

Started: 2025-08-10 19:12:50
Settings
Chain sequence(s) A: AIITVTPKSFGSPGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYF
H: QVQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWNWIRQPPGKGLEWIGEINHNGNTNSNPSLKSRVTLSLDTSKNQFSLKLRSVTAADTAVYYCAFGYSDYEYNWFDPWGQGTLVTVS
L: EIVLTQSPATLSLSPGERATLSCRASQSISSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPLTFGQGTNLE
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:11)
Show buried residues

Minimal score value
-2.7431
Maximal score value
2.1892
Average score
-0.4767
Total score value
-144.4395

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 1.2105
2 I A 2.0369
3 I A 1.0521
4 T A 0.3766
5 V A 0.3415
6 T A -0.3163
7 P A -0.6771
8 K A -1.2355
9 S A -0.8165
10 F A -0.4717
11 G A -0.3119
12 S A -0.2485
13 P A -0.3539
14 G A -0.5360
15 S A -0.7825
16 L A -0.2280
17 G A -1.0883
18 K A -1.3950
19 L A 0.0000
20 L A -0.2379
21 C A 0.0000
22 E A -0.2540
23 V A 0.0000
24 T A 0.6427
25 P A 0.6433
26 V A 0.9446
27 S A -0.0928
28 G A -0.8598
29 Q A -1.4740
30 E A -1.1158
31 R A -1.2481
32 F A -0.2253
33 V A 0.2655
34 W A 0.0000
35 S A -0.1979
36 S A -0.5314
37 L A -0.2115
38 D A -1.6287
39 T A -0.8494
40 P A -0.7536
41 S A -0.5622
42 Q A -0.6115
43 R A 0.0000
44 S A -0.1133
45 F A 0.2301
46 S A -0.2824
47 G A 0.0691
48 P A 0.2205
49 W A 0.3464
50 L A 0.0000
51 E A -1.9031
52 A A -1.3432
53 Q A -1.5560
54 E A -1.8197
55 A A -0.7302
56 Q A 0.0200
57 L A 1.5809
58 L A 1.3777
59 S A 0.2297
60 Q A -0.1318
61 P A 0.2925
62 W A 0.0000
63 Q A 0.2316
64 C A 0.0000
65 Q A 0.0000
66 L A 0.0000
67 Y A -0.6955
68 Q A -1.2965
69 G A -1.7777
70 E A -2.7431
71 R A -2.2057
72 L A 0.0315
73 L A 0.8249
74 G A 0.9087
75 A A 0.8351
76 A A 0.6467
77 V A 1.1800
78 Y A 1.4866
79 F A 2.1892
80 Q H -1.4349
81 V H -0.8500
82 Q H -1.3267
83 L H 0.0000
84 Q H -0.6945
85 Q H 0.0000
86 W H 0.2290
87 G H 0.0753
88 A H 0.6898
89 G H 0.0000
90 L H 1.5540
91 L H -0.3288
92 K H -1.9873
93 P H -1.6135
94 S H -1.8123
95 E H -2.7229
96 T H -1.9836
97 L H 0.0000
98 S H -0.9385
99 L H 0.0000
100 T H -0.1757
101 C H 0.0000
102 A H 0.0000
103 V H -0.0983
104 Y H 0.2632
105 G H -0.6851
106 G H -0.8561
107 S H -0.0747
108 F H 0.2645
109 S H -0.0683
110 D H -0.1582
111 Y H 0.2387
112 Y H 0.1775
113 W H 0.0000
114 N H -0.0496
115 W H 0.0000
116 I H 0.0000
117 R H 0.0000
118 Q H -0.6092
119 P H -0.8111
120 P H -0.8672
121 G H -1.5188
122 K H -2.4752
123 G H -1.9046
124 L H 0.0000
125 E H -0.8650
126 W H 0.0000
127 I H 0.0000
128 G H 0.0000
129 E H 0.0000
130 I H 0.1404
131 N H 0.0000
132 H H -0.2266
133 N H -0.1688
134 G H -0.5042
135 N H -0.8007
136 T H -0.4118
137 N H -0.7669
138 S H -0.9125
139 N H -1.2001
140 P H -1.2465
141 S H -0.8762
142 L H 0.0000
143 K H -2.0565
144 S H -1.3963
145 R H -1.5443
146 V H -1.3107
147 T H -0.9082
148 L H -0.2738
149 S H -0.2227
150 L H -0.6802
151 D H -1.6948
152 T H -1.4551
153 S H -1.6309
154 K H -2.6644
155 N H -2.4071
156 Q H -1.5413
157 F H 0.0000
158 S H -0.4732
159 L H 0.0000
160 K H -1.2210
161 L H 0.0000
162 R H -2.1672
163 S H -1.8193
164 V H 0.0000
165 T H -0.7295
166 A H -0.1957
167 A H 0.0671
168 D H 0.0000
169 T H 0.4994
170 A H 0.0000
171 V H 0.9532
172 Y H 0.0000
173 Y H 0.0000
174 C H 0.0000
175 A H 0.0000
176 F H 0.0000
177 G H 0.0000
178 Y H 0.2782
179 S H -0.2916
180 D H -0.9096
181 Y H 0.1288
182 E H -1.2246
183 Y H -0.0667
184 N H -1.1652
185 W H -0.5026
186 F H 0.0146
187 D H 0.0000
188 P H 0.0000
189 W H -0.5727
190 G H 0.0000
191 Q H -1.5352
192 G H -0.3705
193 T H 0.8417
194 L H 1.9602
195 V H 0.0000
196 T H 0.7251
197 V H 0.0000
198 S H -0.4850
199 E L -1.5065
200 I L 0.0000
201 V L 0.9018
202 L L 0.0000
203 T L -0.7194
204 Q L 0.0000
205 S L -0.6968
206 P L -0.3896
207 A L -0.2924
208 T L -0.4332
209 L L -0.2534
210 S L -0.7417
211 L L -0.8362
212 S L -1.2539
213 P L -1.8779
214 G L -1.8857
215 E L -2.4276
216 R L -2.5610
217 A L 0.0000
218 T L -0.6796
219 L L 0.0000
220 S L -0.8883
221 C L 0.0000
222 R L -2.3731
223 A L 0.0000
224 S L -0.7648
225 Q L -1.1191
226 S L -1.4276
227 I L 0.0000
228 S L -0.6725
229 S L -0.3864
230 Y L 0.2562
231 L L 0.0000
232 A L 0.0000
233 W L 0.0000
234 Y L 0.0000
235 Q L 0.0000
236 Q L -1.2740
237 K L -2.3466
238 P L -1.4031
239 G L -1.4708
240 Q L -1.7887
241 A L -1.1477
242 P L 0.0000
243 R L -0.9427
244 L L 0.0000
245 L L 0.0000
246 I L 0.0000
247 Y L -0.6447
248 D L -0.7883
249 A L 0.0000
250 S L -1.0231
251 N L -1.5723
252 R L -1.7028
253 A L 0.0000
254 T L -0.6376
255 G L -0.5755
256 I L -0.3511
257 P L -0.3254
258 A L -0.3487
259 R L -0.6950
260 F L 0.0000
261 S L -0.6368
262 G L -0.6982
263 S L -0.8200
264 G L -1.1811
265 S L -1.1368
266 G L -1.5643
267 T L 0.0000
268 D L -2.5189
269 F L 0.0000
270 T L -0.8443
271 L L 0.0000
272 T L -0.5834
273 I L 0.0000
274 S L -1.5941
275 S L -1.7522
276 L L 0.0000
277 E L -2.2769
278 P L -1.9501
279 E L -2.4060
280 D L 0.0000
281 F L -1.2422
282 A L 0.0000
283 V L -0.5822
284 Y L 0.0000
285 Y L 0.0000
286 C L 0.0000
287 Q L 0.0000
288 Q L 0.0000
289 R L -0.2111
290 S L 0.0000
291 N L -0.3842
292 W L 0.0000
293 P L -0.7713
294 L L 0.0000
295 T L -0.2928
296 F L 0.0000
297 G L 0.0000
298 Q L -1.5672
299 G L -0.7409
300 T L 0.0000
301 N L -0.7837
302 L L 0.0000
303 E L -1.6960
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018