Project name: EAK16-II_2

Status: done

Started: 2026-06-24 06:54:47
Settings
Chain sequence(s) A: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:23)
Show buried residues

Minimal score value
-3.5355
Maximal score value
0.0
Average score
-2.5751
Total score value
-82.4036

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.7809
2 E A -2.3919
3 A A -2.1445
4 E A -2.7301
5 A A -2.2877
6 K A -2.8065
7 A A -3.0148
8 K A -3.1781
9 A A -2.5149
10 E A -3.0599
11 A A 0.0000
12 E A -3.4665
13 A A -2.7960
14 K A -3.2016
15 A A -2.7423
16 K A -2.7245
1 A B -1.8188
2 E B -2.3364
3 A B -2.3154
4 E B -2.9563
5 A B -2.3164
6 K B -2.9077
7 A B -3.0590
8 K B -2.9784
9 A B -2.5758
10 E B -3.1759
11 A B 0.0000
12 E B -3.5355
13 A B -2.8451
14 K B -3.3062
15 A B -2.7469
16 K B -2.6896
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Laboratory of Theory of Biopolymers 2018