| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -1.7809 | |
| 2 | E | A | -2.3919 | |
| 3 | A | A | -2.1445 | |
| 4 | E | A | -2.7301 | |
| 5 | A | A | -2.2877 | |
| 6 | K | A | -2.8065 | |
| 7 | A | A | -3.0148 | |
| 8 | K | A | -3.1781 | |
| 9 | A | A | -2.5149 | |
| 10 | E | A | -3.0599 | |
| 11 | A | A | 0.0000 | |
| 12 | E | A | -3.4665 | |
| 13 | A | A | -2.7960 | |
| 14 | K | A | -3.2016 | |
| 15 | A | A | -2.7423 | |
| 16 | K | A | -2.7245 | |
| 1 | A | B | -1.8188 | |
| 2 | E | B | -2.3364 | |
| 3 | A | B | -2.3154 | |
| 4 | E | B | -2.9563 | |
| 5 | A | B | -2.3164 | |
| 6 | K | B | -2.9077 | |
| 7 | A | B | -3.0590 | |
| 8 | K | B | -2.9784 | |
| 9 | A | B | -2.5758 | |
| 10 | E | B | -3.1759 | |
| 11 | A | B | 0.0000 | |
| 12 | E | B | -3.5355 | |
| 13 | A | B | -2.8451 | |
| 14 | K | B | -3.3062 | |
| 15 | A | B | -2.7469 | |
| 16 | K | B | -2.6896 |