Project name: query_structure

Status: done

Started: 2026-03-17 01:23:17
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAPAVTVDYYFITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAWYGYELYESSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)
Show buried residues

Minimal score value
-2.6525
Maximal score value
1.8417
Average score
-0.4375
Total score value
-40.2526

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.8417
2 S A 0.8219
3 S A 0.7492
4 V A 0.1656
5 P A 0.0000
6 T A -1.6447
7 K A -2.6337
8 L A 0.0000
9 E A -1.9207
10 V A 0.1117
11 V A 1.5485
12 A A 0.9044
13 A A 0.3070
14 T A -0.3598
15 P A -1.1857
16 T A -1.0450
17 S A -0.5423
18 L A 0.0000
19 L A 0.7669
20 I A 0.0000
21 S A -0.9676
22 W A 0.0000
23 D A -2.6525
24 A A -1.2032
25 P A 0.1124
26 A A 0.5997
27 V A 0.8345
28 T A 0.0050
29 V A -0.3448
30 D A -1.1890
31 Y A 0.1022
32 Y A 0.0000
33 F A 0.3077
34 I A 0.0000
35 T A -0.3480
36 Y A -0.2186
37 G A 0.0000
38 E A -1.4636
39 T A -1.2225
40 G A -1.3057
41 G A -1.2094
42 N A -1.6401
43 S A -0.7793
44 P A -0.2352
45 V A 0.5326
46 Q A -0.7489
47 E A -1.4577
48 F A -0.4551
49 T A 0.2435
50 V A 0.0000
51 P A -0.6622
52 G A -0.8586
53 S A -1.2172
54 K A -2.0447
55 S A -1.3107
56 T A -0.7532
57 A A 0.0000
58 T A 0.2444
59 I A 0.0000
60 S A -0.6538
61 G A -1.0420
62 L A 0.0000
63 K A -2.4269
64 P A -1.8132
65 G A -1.5489
66 V A -1.5115
67 D A -2.0021
68 Y A -1.2036
69 T A -0.6887
70 I A 0.0000
71 T A -0.2000
72 V A 0.0000
73 Y A 0.5689
74 A A 0.0000
75 W A 0.6971
76 Y A 0.3292
77 G A -0.0064
78 Y A 0.6568
79 E A -0.2618
80 L A 1.3961
81 Y A 1.3701
82 E A 0.2527
83 S A 0.0000
84 S A -0.1264
85 P A -0.0560
86 I A 0.0879
87 S A -0.5307
88 I A -0.7054
89 N A -1.6908
90 Y A -1.4709
91 R A -2.5480
92 T A -1.7035
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018