| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VG39A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.389405 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:30)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:33)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:59)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.2949 | |
| 2 | A | A | -1.7139 | |
| 3 | E | A | -2.4638 | |
| 4 | F | A | -1.0030 | |
| 5 | R | A | -2.8663 | |
| 6 | H | A | -3.0893 | |
| 7 | D | A | -2.7669 | |
| 8 | S | A | -1.6368 | |
| 9 | G | A | -1.3808 | |
| 10 | Y | A | -1.1843 | |
| 11 | E | A | -2.2277 | |
| 12 | V | A | -0.5396 | |
| 13 | H | A | -0.6374 | |
| 14 | H | A | -1.2089 | |
| 15 | Q | A | -0.3868 | |
| 16 | K | A | 0.1910 | |
| 17 | L | A | 1.8895 | |
| 18 | V | A | 2.1305 | |
| 19 | F | A | 2.1754 | |
| 20 | F | A | 2.1339 | |
| 21 | A | A | 0.8150 | |
| 22 | E | A | -0.9888 | |
| 23 | D | A | -1.1397 | |
| 24 | V | A | -0.8140 | |
| 25 | G | A | -1.5412 | |
| 26 | S | A | -1.9558 | |
| 27 | N | A | -2.3569 | |
| 28 | K | A | -1.8485 | |
| 29 | G | A | -1.1084 | |
| 30 | A | A | -0.3163 | |
| 31 | I | A | 0.5002 | |
| 32 | I | A | 1.3343 | |
| 33 | G | A | 1.2595 | |
| 34 | L | A | 2.4760 | |
| 35 | M | A | 2.4903 | |
| 36 | V | A | 3.1308 | |
| 37 | G | A | 2.1145 | |
| 38 | G | A | 1.7427 | |
| 39 | G | A | 1.8634 | mutated: VG39A |
| 40 | V | A | 3.0412 | |
| 41 | I | A | 2.7723 | |
| 42 | A | A | 1.2132 |