Project name: d64564c424fc25d

Status: done

Started: 2025-06-03 05:11:07
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Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLSCAASGFKFSGYGMHWVRQAPGKGLEWVAVIWYDGSKKYYVDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARQMGYWHFDLWGRGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
Show buried residues

Minimal score value
-2.5861
Maximal score value
1.8025
Average score
-0.5934
Total score value
-134.1018

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1460
2 V H -0.4494
3 Q H -0.7422
4 L H 0.0000
5 V H 0.3726
6 E H 0.0000
7 S H -0.3793
8 G H -0.7527
9 G H 0.1684
11 G H 0.9476
12 V H 1.8025
13 V H -0.0213
14 Q H -1.1949
15 P H -1.8054
16 G H -2.0498
17 R H -2.5861
18 S H -1.9199
19 L H -1.2342
20 R H -2.0060
21 L H 0.0000
22 S H -0.3949
23 C H 0.0000
24 A H -0.2321
25 A H 0.0000
26 S H -0.9172
27 G H -1.0528
28 F H -0.9945
29 K H -1.8319
30 F H 0.0000
35 S H -1.2676
36 G H -0.8013
37 Y H -0.1325
38 G H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6046
45 A H -1.0239
46 P H -0.8130
47 G H -1.4569
48 K H -2.2726
49 G H -1.3560
50 L H 0.0000
51 E H -0.8436
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.5788
58 Y H -0.1029
59 D H -1.4799
62 G H -1.2902
63 S H -1.3361
64 K H -1.8727
65 K H -1.2498
66 Y H -0.5982
67 Y H -0.7522
68 V H -1.0007
69 D H -2.3101
70 S H -1.6330
71 V H 0.0000
72 K H -2.3018
74 G H -1.6643
75 R H -1.4907
76 F H 0.0000
77 T H -0.8085
78 I H 0.0000
79 S H -0.5186
80 R H -0.9213
81 D H -1.6229
82 N H -1.9302
83 S H -1.5524
84 K H -2.3787
85 N H -2.0740
86 T H -0.9943
87 L H 0.0000
88 Y H -0.3838
89 L H 0.0000
90 Q H -1.0961
91 M H 0.0000
92 N H -1.7721
93 S H -1.7170
94 L H 0.0000
95 R H -2.5173
96 A H -1.6577
97 E H -2.2689
98 D H 0.0000
99 T H -0.3462
100 A H 0.0000
101 V H 0.7356
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3577
107 Q H 0.0724
108 M H 0.2061
109 G H 0.1233
110 Y H 0.8294
113 W H 0.4961
114 H H 0.0000
115 F H 0.0000
116 D H -0.7853
117 L H -0.3875
118 W H 0.0000
119 G H -0.8614
120 R H -1.7948
121 G H 0.0000
122 T H 0.4020
123 L H 1.5521
124 V H 0.0000
125 T H 0.5195
126 V H 0.0000
127 S H -0.4954
128 S H -0.4581
1 E L -1.7692
2 I L 0.0000
3 V L 0.7094
4 L L 0.0000
5 T L -0.6068
6 Q L -0.6691
7 S L -0.7340
8 P L -0.4003
9 A L -0.3407
10 T L -0.3946
11 L L -0.0671
12 S L -0.1669
13 L L -0.4802
14 S L -0.7879
15 P L -1.1656
16 G L -1.5039
17 E L -2.0724
18 R L -2.4155
19 A L 0.0000
20 T L -0.6216
21 L L 0.0000
22 S L -0.8512
23 C L 0.0000
24 R L -2.3342
25 A L 0.0000
26 S L -1.0297
27 Q L -1.8801
28 S L -1.4415
29 V L 0.0000
36 S L -0.7011
37 S L -0.2805
38 Y L 0.3096
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1210
46 P L -0.8532
47 G L -1.4081
48 Q L -1.9588
49 A L -1.3599
50 P L 0.0000
51 R L -0.9391
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1044
56 D L -0.3063
57 A L 0.0000
65 S L -0.8835
66 N L -1.2787
67 R L -1.4482
68 A L -0.9165
69 T L -0.6755
70 G L -0.5829
71 I L -0.5497
72 P L -0.3503
74 A L -0.3378
75 R L -0.6077
76 F L 0.0000
77 S L -0.6021
78 G L 0.0000
79 S L -0.7110
80 G L -1.0365
83 S L -0.9749
84 G L -1.1145
85 T L -1.7256
86 D L -2.0852
87 F L 0.0000
88 T L -0.7440
89 L L 0.0000
90 T L -0.5789
91 I L 0.0000
92 S L -1.1976
93 S L -1.4514
94 L L 0.0000
95 E L -1.6803
96 P L -1.0441
97 E L -1.6791
98 D L 0.0000
99 F L -0.2037
100 A L 0.0000
101 V L -0.0845
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L 0.0000
108 S L -0.5506
109 N L -1.6606
113 W L -0.8055
114 P L -0.7266
115 P L -0.8679
116 L L 0.0000
117 T L -0.1355
118 F L 0.1926
119 G L 0.0000
120 G L -0.6413
121 G L -0.6816
122 T L 0.0000
123 K L -0.6324
124 V L 0.0000
125 E L 0.0619
126 I L 0.9163
127 K L -0.8639
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Laboratory of Theory of Biopolymers 2018