| Chain sequence(s) |
B: SYMKKREEREKKEKEKKKEEKEKAKKEEEEKKK
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:01)
[INFO] Main: Simulation completed successfully. (00:03:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | S | B | -0.6904 | |
| 2 | Y | B | -0.2252 | |
| 3 | M | B | -1.1567 | |
| 4 | K | B | -3.6270 | |
| 5 | K | B | -4.5201 | |
| 6 | R | B | -5.0505 | |
| 7 | E | B | -6.0237 | |
| 8 | E | B | -6.6179 | |
| 9 | R | B | -7.1088 | |
| 10 | E | B | -7.1468 | |
| 11 | K | B | -7.3205 | |
| 12 | K | B | -7.3156 | |
| 13 | E | B | -7.2094 | |
| 14 | K | B | -7.2236 | |
| 15 | E | B | -7.3666 | |
| 16 | K | B | -7.1681 | |
| 17 | K | B | -6.8780 | |
| 18 | K | B | -6.9846 | |
| 19 | E | B | -7.0897 | |
| 20 | E | B | -6.7773 | |
| 21 | K | B | -6.4250 | |
| 22 | E | B | -6.7028 | |
| 23 | K | B | -6.4750 | |
| 24 | A | B | -5.5915 | |
| 25 | K | B | -6.5116 | |
| 26 | K | B | -6.6856 | |
| 27 | E | B | -6.8071 | |
| 28 | E | B | -6.8106 | |
| 29 | E | B | -6.6003 | |
| 30 | E | B | -6.3935 | |
| 31 | K | B | -5.9953 | |
| 32 | K | B | -5.3872 | |
| 33 | K | B | -4.5372 |