Project name: d66d64b1361c3b4

Status: done

Started: 2024-07-23 17:14:08
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Chain sequence(s) H: QVQLVESGGGLVQAGDSLRLSCGASGGTFSRYGMGWFRQAPGKEREFVASITWSSGSTYYADSVKGRFTMSMDTAKTTVYLQMNSLKPEDTAAYYCAAELFGLGSANPHEYNAWGQGTLVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-2.8888
Maximal score value
2.398
Average score
-0.5068
Total score value
-62.8371

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4666
2 V H -1.0570
3 Q H -1.0400
4 L H 0.0000
5 V H 1.0385
6 E H 0.3362
7 S H -0.2761
8 G H -0.5844
9 G H 0.1559
11 G H 0.8377
12 L H 1.4070
13 V H 0.0000
14 Q H -1.8473
15 A H -2.1582
16 G H -2.0943
17 D H -2.6013
18 S H -1.7469
19 L H -0.8055
20 R H -1.2991
21 L H 0.0000
22 S H -0.2319
23 C H 0.0000
24 G H -0.1778
25 A H 0.0000
26 S H -0.8658
27 G H -1.1156
28 G H -1.0823
29 T H -1.1374
30 F H 0.0000
35 S H -1.1337
36 R H -1.2482
37 Y H 0.3742
38 G H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H -1.4295
45 A H -1.4191
46 P H -1.1553
47 G H -1.6204
48 K H -2.5650
49 E H -2.8888
50 R H -1.9274
51 E H -1.2935
52 F H -0.3988
53 V H 0.0000
54 A H 0.0000
55 S H 0.0000
56 I H 0.0000
57 T H 0.0067
58 W H -0.6164
59 S H -0.8976
62 S H -0.5887
63 G H -0.6275
64 S H -0.2852
65 T H 0.3076
66 Y H 0.8212
67 Y H -0.1583
68 A H -0.9093
69 D H -2.1469
70 S H -1.5779
71 V H 0.0000
72 K H -1.8232
74 G H -1.4654
75 R H -1.3450
76 F H 0.0000
77 T H -0.5094
78 M H 0.0000
79 S H -0.1045
80 M H -0.2274
81 D H -0.6882
82 T H -0.5995
83 A H -0.8476
84 K H -1.7872
85 T H -1.0615
86 T H -0.4991
87 V H 0.0000
88 Y H -0.2684
89 L H 0.0000
90 Q H -0.7873
91 M H 0.0000
92 N H -1.6116
93 S H -1.6747
94 L H 0.0000
95 K H -2.6903
96 P H -1.9532
97 E H -2.3645
98 D H 0.0000
99 T H -0.5779
100 A H 0.0000
101 A H 0.2682
102 Y H 0.0000
103 Y H 0.2223
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 E H 0.0000
108 L H 1.7952
109 F H 2.3980
110 G H 1.0239
111 L H 1.8464
111A G H 1.0529
111B S H 0.2756
112B A H -0.0868
112A N H -1.0378
112 P H -1.1782
113 H H -1.7367
114 E H -0.7713
115 Y H 0.0000
116 N H -1.3093
117 A H -0.7655
118 W H -0.1935
119 G H -0.2995
120 Q H -0.6161
121 G H -0.0305
122 T H 0.4038
123 L H 1.4022
124 V H 0.0000
125 T H 0.2225
126 V H 0.0000
127 S H -0.7950
128 S H -0.8520
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Laboratory of Theory of Biopolymers 2018