| Chain sequence(s) |
A: FKFKGHFKF
C: FKFKGHFKF B: FKFKGHFKF E: FKFKGHFKF D: FKFKGHFKF G: FKFKGHFKF F: FKFKGHFKF I: FKFKGHFKF H: FKFKGHFKF K: FKFKGHFKF J: FKFKGHFKF L: FKFKGHFKF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:16:37)
[INFO] Main: Simulation completed successfully. (00:16:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.4883 | |
| 2 | K | A | -0.4796 | |
| 3 | F | A | -0.5667 | |
| 4 | K | A | -1.7727 | |
| 5 | G | A | -1.0909 | |
| 6 | H | A | -1.5588 | |
| 7 | F | A | -0.3847 | |
| 8 | K | A | -0.4537 | |
| 9 | F | A | 1.5882 | |
| 1 | F | B | 1.6124 | |
| 2 | K | B | -0.4328 | |
| 3 | F | B | -0.0778 | |
| 4 | K | B | -1.7164 | |
| 5 | G | B | -1.1241 | |
| 6 | H | B | -1.7343 | |
| 7 | F | B | -0.3525 | |
| 8 | K | B | -0.6558 | |
| 9 | F | B | 1.4471 | |
| 1 | F | C | 0.6674 | |
| 2 | K | C | -0.8048 | |
| 3 | F | C | 0.0000 | |
| 4 | K | C | -1.9019 | |
| 5 | G | C | 0.0000 | |
| 6 | H | C | -1.5295 | |
| 7 | F | C | 0.0000 | |
| 8 | K | C | -0.4770 | |
| 9 | F | C | 1.3115 | |
| 1 | F | D | 0.5288 | |
| 2 | K | D | -1.2729 | |
| 3 | F | D | 0.0000 | |
| 4 | K | D | -1.7544 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -1.3676 | |
| 7 | F | D | 0.0000 | |
| 8 | K | D | -0.8720 | |
| 9 | F | D | 0.9285 | |
| 1 | F | E | 0.7617 | |
| 2 | K | E | -1.1997 | |
| 3 | F | E | 0.0000 | |
| 4 | K | E | -1.9451 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | -1.3505 | |
| 7 | F | E | 0.0000 | |
| 8 | K | E | -1.0858 | |
| 9 | F | E | 0.8022 | |
| 1 | F | F | 1.7511 | |
| 2 | K | F | -0.9484 | |
| 3 | F | F | 0.0000 | |
| 4 | K | F | -2.4324 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | -1.6318 | |
| 7 | F | F | 0.0000 | |
| 8 | K | F | -0.7766 | |
| 9 | F | F | 0.9778 | |
| 1 | F | G | 1.2163 | |
| 2 | K | G | -1.3251 | |
| 3 | F | G | -1.2954 | |
| 4 | K | G | -2.6666 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -1.9988 | |
| 7 | F | G | -0.9305 | |
| 8 | K | G | -1.0369 | |
| 9 | F | G | 1.3400 | |
| 1 | F | H | 1.7249 | |
| 2 | K | H | -0.9555 | |
| 3 | F | H | -0.8315 | |
| 4 | K | H | -2.5659 | |
| 5 | G | H | -1.3065 | |
| 6 | H | H | -1.8585 | |
| 7 | F | H | -0.5747 | |
| 8 | K | H | -0.8670 | |
| 9 | F | H | 1.4548 | |
| 1 | F | I | 0.5144 | |
| 2 | K | I | -1.1920 | |
| 3 | F | I | 0.0000 | |
| 4 | K | I | -2.2983 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -1.6712 | |
| 7 | F | I | 0.0000 | |
| 8 | K | I | -0.7297 | |
| 9 | F | I | 0.9126 | |
| 1 | F | J | 0.3042 | |
| 2 | K | J | -1.3886 | |
| 3 | F | J | 0.0000 | |
| 4 | K | J | -1.9264 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -1.2352 | |
| 7 | F | J | 0.0000 | |
| 8 | K | J | -0.6006 | |
| 9 | F | J | 1.1621 | |
| 1 | F | K | 0.2170 | |
| 2 | K | K | -1.6288 | |
| 3 | F | K | 0.0000 | |
| 4 | K | K | -1.8462 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -1.1488 | |
| 7 | F | K | 0.0000 | |
| 8 | K | K | -0.3106 | |
| 9 | F | K | 1.1554 | |
| 1 | F | L | 0.6855 | |
| 2 | K | L | -0.7783 | |
| 3 | F | L | 0.0000 | |
| 4 | K | L | -1.9285 | |
| 5 | G | L | 0.0000 | |
| 6 | H | L | -1.4881 | |
| 7 | F | L | 0.0000 | |
| 8 | K | L | -0.4020 | |
| 9 | F | L | 1.2326 |