Project name: RFC5

Status: done

Started: 2025-07-15 15:35:53
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Chain sequence(s) A: GPTDTLNVMVNGEKKTLTGTGTKAAANDDYTFTPLTYTKDITSNVVKVKVVDTDTTTGGDATDTEVDVVEITSNSNSTKLTVKHTRTLTTAP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.4916
Maximal score value
0.8485
Average score
-1.011
Total score value
-93.0161

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8634
2 P A -0.7126
3 T A -0.4838
4 D A 0.0000
5 T A -0.5950
6 L A 0.0000
7 N A -1.0304
8 V A 0.0000
9 M A -2.3095
10 V A 0.0000
11 N A -2.5467
12 G A -2.8063
13 E A -3.4916
14 K A -3.3436
15 K A -1.9892
16 T A -0.6659
17 L A -0.3077
18 T A -0.1812
19 G A 0.0000
20 T A -0.4840
21 G A 0.0000
22 T A -1.2002
23 K A -2.4420
24 A A -1.6198
25 A A -1.0155
26 A A -1.1840
27 N A -2.4434
28 D A -2.9062
29 D A -2.0524
30 Y A -1.4929
31 T A -0.6196
32 F A 0.0000
33 T A -0.2482
34 P A -0.3384
35 L A 0.0000
36 T A -0.3568
37 Y A -0.2479
38 T A -0.9992
39 K A -1.8037
40 D A -2.3808
41 I A -0.9438
42 T A -0.8150
43 S A -0.3516
44 N A -0.3363
45 V A 0.8485
46 V A -0.0735
47 K A -1.8389
48 V A -1.1875
49 K A -1.6089
50 V A -0.3824
51 V A -0.3833
52 D A -1.6457
53 T A -1.4219
54 D A -2.2194
55 T A -0.9190
56 T A -0.9775
57 T A -0.8053
58 G A -1.1149
59 G A -1.6094
60 D A -2.2400
61 A A -1.3737
62 T A -0.9280
63 D A -1.5936
64 T A -1.0025
65 E A -1.7025
66 V A 0.0025
67 D A -0.8299
68 V A 0.4471
69 V A 0.6285
70 E A -0.5518
71 I A 0.1879
72 T A -0.7411
73 S A -1.2507
74 N A -2.0501
75 S A -1.5327
76 N A -1.9745
77 S A -1.8848
78 T A -1.6672
79 K A -2.0352
80 L A 0.0000
81 T A -0.6172
82 V A 0.0000
83 K A -0.7572
84 H A 0.0000
85 T A -0.5996
86 R A 0.0000
87 T A -0.6181
88 L A 0.0000
89 T A -1.3804
90 T A -1.5305
91 A A -1.2899
92 P A -1.1832
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Laboratory of Theory of Biopolymers 2018