Project name: poonia

Status: done

Started: 2025-02-04 13:58:04
Settings
Chain sequence(s) A: GIVEQCCTSICSLYQLENYCN
B: FVNQHLCGSHLVEALYLVCGERGFFA
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-2.653
Maximal score value
2.6053
Average score
-0.1583
Total score value
-7.439

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3376
2 I A 1.0664
3 V A 0.4334
4 E A -1.2737
5 Q A -0.9246
6 C A 0.0000
7 C A -0.1315
8 T A -0.5461
9 S A -0.2009
10 I A 0.8374
11 C A 0.2847
12 S A 0.5604
13 L A 0.5327
14 Y A 0.1940
15 Q A -1.0580
16 L A 0.0000
17 E A -2.0078
18 N A -2.0268
19 Y A -0.5407
20 C A -0.7772
21 N A -1.6647
1 F B 2.6053
2 V B 2.3920
3 N B 1.0058
4 Q B -0.1991
5 H B -0.7467
6 L B 0.0000
7 C B 0.0757
8 G B -0.0768
9 S B -0.8970
10 H B -1.4500
11 L B 0.0000
12 V B 0.4046
13 E B -0.8981
14 A B 0.1209
15 L B 0.0000
16 Y B 1.1667
17 L B 1.7338
18 V B 0.8431
19 C B -0.4209
20 G B -0.8170
21 E B -2.4821
22 R B -2.6530
23 G B -1.0130
24 F B 0.3876
25 F B 0.6490
26 A B 0.4108
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018