Project name: query_structure

Status: done

Started: 2026-03-16 20:30:31
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWAIDEQRDWFESFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVYHVYRSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:09)
Show buried residues

Minimal score value
-3.6933
Maximal score value
1.8184
Average score
-0.7747
Total score value
-70.5017

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.5746
2 P A -0.4784
3 A A -0.8328
4 P A 0.0000
5 K A -1.3149
6 N A -1.1313
7 L A 0.0360
8 V A 1.2524
9 V A 0.7008
10 S A -0.5897
11 R A -1.9900
12 V A -0.9867
13 T A -1.7679
14 E A -3.0114
15 D A -2.6893
16 S A -2.0379
17 A A 0.0000
18 R A -1.1563
19 L A 0.0000
20 S A -0.2870
21 W A 0.0000
22 A A -1.0306
23 I A -1.8370
24 D A -2.5717
25 E A -3.4327
26 Q A -3.3940
27 R A -3.6933
28 D A -3.3034
29 W A -1.5174
30 F A 0.0000
31 E A -2.1879
32 S A -1.4300
33 F A 0.0000
34 L A 0.3486
35 I A 0.0000
36 Q A 0.4516
37 Y A 0.3472
38 Q A -0.9192
39 E A -1.8957
40 S A -1.5424
41 E A -2.7346
42 K A -2.4119
43 V A -0.1747
44 G A -1.2150
45 E A -1.5936
46 A A -0.3652
47 I A 0.8408
48 V A 1.5915
49 L A 1.1760
50 T A 0.4042
51 V A 0.0000
52 P A -1.1523
53 G A 0.0000
54 S A -1.5914
55 E A -1.6218
56 R A -0.9789
57 S A -0.6399
58 Y A -0.6741
59 D A -1.5744
60 L A 0.0000
61 T A -1.4074
62 G A -1.4853
63 L A 0.0000
64 K A -2.9750
65 P A -2.5029
66 G A -1.8126
67 T A -2.1988
68 E A -1.9385
69 Y A 0.0000
70 T A 0.0089
71 V A 0.0000
72 S A 0.1936
73 I A 0.0000
74 Y A 0.0000
75 G A 0.0000
76 V A -0.1273
77 Y A 0.1321
78 H A -0.0063
79 V A 1.7159
80 Y A 1.3811
81 R A -0.8467
82 S A 0.0000
83 N A -1.5429
84 P A -1.0298
85 L A -0.5348
86 S A 0.1355
87 A A 1.1861
88 I A 1.8184
89 F A 0.0000
90 T A -0.7607
91 T A -1.8713
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Laboratory of Theory of Biopolymers 2018