Project name: d808d2704bcff2

Status: done

Started: 2025-06-03 04:52:18
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGFSLSNYDVHWVRQAPGKGLEWLGVIWSGGNTDYNTPFTSRLTISVDTSKNQFSLKLSSVTAADTAVYYCARALDYYDYEFAYWGQGTLVTVSS
L: EIVLTQSPDFQSVTPKEKVTITCRASQSIGTNIHWYQQKPDQSPKLLIKYASESISGIPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQNNEWPTSFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:54)
Show buried residues

Minimal score value
-3.3117
Maximal score value
1.909
Average score
-0.5961
Total score value
-134.7242

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5475
2 V H -1.0473
3 Q H -1.8327
4 L H 0.0000
5 Q H -1.8613
6 E H 0.0000
7 S H -0.8457
8 G H -0.4722
9 P H -0.0681
11 G H 0.3342
12 L H 0.8688
13 V H 0.0000
14 K H -1.1998
15 P H -1.1928
16 S H -1.3109
17 E H -1.9235
18 T H -1.4251
19 L H 0.0000
20 S H -0.9760
21 L H 0.0000
22 T H -0.6664
23 C H 0.0000
24 T H -1.2963
25 V H 0.0000
26 S H -1.4051
27 G H -1.1471
28 F H -0.6848
29 S H -0.6283
30 L H 0.0000
35 S H -0.8290
36 N H -1.0029
37 Y H 0.3179
38 D H 0.0000
39 V H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6541
45 A H -0.7324
46 P H -0.8642
47 G H -1.4396
48 K H -2.2940
49 G H -1.4409
50 L H 0.0000
51 E H -0.8604
52 W H 0.0000
53 L H 0.0000
54 G H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.2454
58 S H -0.6877
59 G H -1.1043
63 G H -1.2656
64 N H -1.5901
65 T H -0.8501
66 D H -0.4282
67 Y H -0.0769
68 N H -0.3506
69 T H -0.3956
70 P H -0.4097
71 F H 0.0000
72 T H -0.4056
74 S H -0.5033
75 R H -0.8816
76 L H 0.0000
77 T H -0.7475
78 I H 0.0000
79 S H -0.6122
80 V H -0.7125
81 D H -1.4645
82 T H -1.3674
83 S H -1.4297
84 K H -2.2991
85 N H -1.6907
86 Q H -1.4609
87 F H 0.0000
88 S H -0.6033
89 L H 0.0000
90 K H -1.5850
91 L H 0.0000
92 S H -1.1848
93 S H -1.0878
94 V H 0.0000
95 T H -0.5280
96 A H -0.1529
97 A H 0.0513
98 D H 0.0000
99 T H 0.2841
100 A H 0.0000
101 V H 0.4902
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 A H 0.0000
108 L H 0.7740
109 D H 0.5423
110 Y H 1.6072
111 Y H 1.9090
112 D H 0.0000
113 Y H 0.0000
114 E H 0.0000
115 F H 0.0000
116 A H 0.1360
117 Y H 0.0315
118 W H -0.6380
119 G H 0.0000
120 Q H -1.9950
121 G H -0.9505
122 T H -0.1153
123 L H 0.9478
124 V H 0.0000
125 T H 0.4237
126 V H 0.0000
127 S H -0.2794
128 S H -0.4250
1 E L -1.3936
2 I L 0.0000
3 V L 0.8130
4 L L 0.0000
5 T L -0.7909
6 Q L 0.0000
7 S L -0.9882
8 P L -0.6673
9 D L -1.4673
10 F L 0.2279
11 Q L -0.3642
12 S L -0.5726
13 V L 0.0000
14 T L -2.0870
15 P L -2.4835
16 K L -3.1740
17 E L -3.3117
18 K L -3.1280
19 V L 0.0000
20 T L -0.6099
21 I L 0.0000
22 T L -0.9813
23 C L 0.0000
24 R L -2.1706
25 A L 0.0000
26 S L -0.7179
27 Q L -1.1553
28 S L -1.2960
29 I L 0.0000
36 G L -0.9347
37 T L -0.7165
38 N L -0.7464
39 I L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.1585
45 K L -1.6186
46 P L -1.6433
47 D L -2.6866
48 Q L -2.5156
49 S L -1.4674
50 P L 0.0000
51 K L -0.8020
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.7942
56 Y L -0.6721
57 A L 0.0000
65 S L -1.2499
66 E L -2.0133
67 S L -1.1405
68 I L -0.5103
69 S L -0.4677
70 G L -0.4252
71 I L -0.1414
72 P L -0.2353
74 S L -0.4437
75 R L -0.9205
76 F L 0.0000
77 S L -0.7249
78 G L -0.6950
79 S L -0.7770
80 G L -0.9704
83 S L -1.0185
84 G L -1.1240
85 T L -1.5755
86 D L -2.0577
87 F L 0.0000
88 T L -0.7061
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 N L -2.1447
93 S L -2.5606
94 L L 0.0000
95 E L -2.5153
96 A L -1.6011
97 E L -1.6730
98 D L 0.0000
99 A L -0.9433
100 A L 0.0000
101 T L -0.7201
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 N L -0.7302
108 N L -1.3593
109 E L -1.1726
114 W L 0.0591
115 P L 0.0000
116 T L 0.0000
117 S L -0.2118
118 F L 0.1487
119 G L 0.0000
120 Q L -1.3535
121 G L 0.0000
122 T L 0.0000
123 K L -1.0189
124 L L 0.0000
125 E L -0.9457
126 I L -1.4129
127 K L -1.8432
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Laboratory of Theory of Biopolymers 2018