Project name: obj1 [mutate: SC119C, QD112C, TG114C, LH115C]

Status: done

Started: 2025-02-11 02:56:59
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LH115C,TG114C,QD112C,SC119C
Energy difference between WT (input) and mutated protein (by FoldX) 5.20288 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:37)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-3.3333
Maximal score value
1.5423
Average score
-0.741
Total score value
-88.9161

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0234
2 V C -0.9522
3 Q C -1.2037
4 L C 0.0000
5 V C 0.9629
6 E C 0.0199
7 S C -0.7248
8 G C -1.3499
9 G C -0.9142
10 G C 0.0998
11 L C 1.1312
12 V C 0.0418
13 Q C -1.1762
14 P C -1.3667
15 G C -1.4170
16 G C -0.9851
17 S C -1.2355
18 L C -1.0066
19 R C -2.1860
20 L C 0.0000
21 S C -0.4987
22 C C 0.0000
23 A C -0.0012
24 A C 0.0000
25 S C -0.1292
26 D C 0.0000
27 F C 1.5423
28 T C 0.2494
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1454
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.6885
40 A C -1.3054
41 P C -1.3279
42 G C -1.4348
43 K C -2.1350
44 G C -1.0592
45 L C 0.3678
46 E C -0.3909
47 W C 0.3405
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6476
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6847
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.3904
88 A C -1.7363
89 E C -2.2828
90 D C 0.0000
91 T C -0.8333
92 A C 0.0000
93 I C -0.3443
94 Y C 0.0000
95 Y C 0.1781
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1907
101 D C -3.3333
102 G C -2.0866
103 F C -1.2310
104 N C -2.4286
105 K C -3.1848
106 G C -1.9076
107 F C -0.9859
108 D C -1.1040
109 Y C -0.2190
110 W C 0.4866
111 G C -0.1914
112 D C -1.3648 mutated: QD112C
113 G C -0.7476
114 G C -0.8664 mutated: TG114C
115 H C -0.9403 mutated: LH115C
116 V C 0.0000
117 T C -0.2025
118 V C 0.0000
119 C C -0.2388 mutated: SC119C
120 S C -0.8037
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Laboratory of Theory of Biopolymers 2018